Jatropha Genome Database

JcCA0317991.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317991.30 - phase: 0 /pseudo
         (798 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015004001 assembled CDS                                       246   2e-65
GSVIVT01016674001 assembled CDS                                       207   2e-53
GSVIVT01011764001 assembled CDS                                        89   8e-18
GSVIVT01036852001 assembled CDS                                        59   7e-09

>GSVIVT01015004001 assembled CDS
          Length = 1654

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/321 (46%), Positives = 190/321 (59%), Gaps = 44/321 (13%)

Query: 1    MVACFRYASIDVHSVYLPPSKLEFNYDNQEWIQKEVNEVRQRADLLFKEVQNSLHRISEK 60
            MVACF YASIDVHSVYLPP KLEFN D QEWIQKE +EV  RA+ LF EV  +L +I EK
Sbjct: 906  MVACFCYASIDVHSVYLPPPKLEFNSDIQEWIQKEADEVHNRAEQLFTEVYKALRQILEK 965

Query: 61   ASSVGSQNGDLKASELATFRVVELEGILQKNKEEFEESFRNMPSKEVKVGRPVIDILEIN 120
             S   S +G +KA E +   + ELE +L+K K EFEES  N   +EVK G+P +DILEIN
Sbjct: 966  TSGTESLDG-MKAPE-SRHNIAELEVMLEKEKGEFEESLWNALHREVKAGQPAVDILEIN 1023

Query: 121  KLRRQILFNCIAWNETLKDADRLSTTILHEGQRSFIPKLKEKFVNSVENLVEIDLSPKLG 180
            +L+RQ++F+   W++ L  A  L +  L  G  S   KLKEK + SVE +V+++++ K G
Sbjct: 1024 RLQRQLVFHSYVWDQRLIYAASLGSNNLQAGLSSSTLKLKEKPLTSVEKVVDMNVTSKAG 1083

Query: 181  KSFSSCDSVPVDTKPVVNLNQGGNDSYIHQPVRVHEGRGMDLDLNLRKEAARSLSSSENI 240
            K FSS D + +D  P + LN GG                         +A   LSSS N+
Sbjct: 1084 KGFSSHDLILLDMNPNIVLNLGG-------------------------KAEICLSSSSNV 1118

Query: 241  NEKSDPSESG-----------------NAVRRVHSEGEFPIMDNLSDTLDAAWIGKNQPG 283
            N++SDP ESG                 N VRRV S+G FPIM NLSDTLDAAW G++  G
Sbjct: 1119 NDQSDPVESGKIVRRVLSDGQDPVESRNLVRRVLSDGHFPIMGNLSDTLDAAWAGESHAG 1178

Query: 284  SMTLKDNGSSLPDPAAVNSVA 304
            S T K+NG    D   V S+A
Sbjct: 1179 SKTSKENGYLCADTVVVESLA 1199


>GSVIVT01016674001 assembled CDS
          Length = 1652

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/306 (43%), Positives = 162/306 (52%), Gaps = 68/306 (22%)

Query: 1    MVACFRYASIDVHSVYLPPSKLEFNYDNQEWIQKEVNEVRQRADLLFKEVQNSLHRISEK 60
            MVACFRYASIDVHSVYLPP+KLEFNY+NQEWIQKE NEV  RA+LLF EV N+LHRISEK
Sbjct: 974  MVACFRYASIDVHSVYLPPAKLEFNYENQEWIQKETNEVVDRAELLFSEVCNALHRISEK 1033

Query: 61   ASSVGSQNGDLKASELATFRVVELEGILQKNKEEFEESFRNMPSKEVKVGRPVIDILEIN 120
               +G           +  ++ ELEG+LQK K EFEES +   S+E K G+P++DILEIN
Sbjct: 1034 GHGMG-------LITESRHQIAELEGMLQKEKAEFEESLQKAVSREAKKGQPLVDILEIN 1086

Query: 121  KLRRQILFNCIAWNETLKDADRLSTTILHEGQRSFIPKLKEKFVNSVENLVEIDLSPKLG 180
            +LRRQ+LF    W+  L  A  L                     NS+             
Sbjct: 1087 RLRRQLLFQSYVWDHRLIYAASLDK-------------------NSI------------- 1114

Query: 181  KSFSSCDSVPVDTKPVVNLNQG-GNDSYIHQPVRVHEGRGMDLDLNLRKEAARSLSSSEN 239
              FSSCDS+ VD K     NQG G  S   Q   V++G  M  D N ++E   +L +S N
Sbjct: 1115 -GFSSCDSLLVDAKLNKGPNQGEGISSQSSQHDTVYQGTDMVQDSNHKEEDQGNLPASSN 1173

Query: 240  INEKSDPSESGNAVRRVHSEGEFPIMDNLSDTLDAAWIGKNQPGSMTLKDNGSSLPDPAA 299
                                       +LS TLDA W G+N PG+   KDN  +LPD A 
Sbjct: 1174 ---------------------------DLSHTLDAKWTGENHPGTGAPKDNTCALPDLAL 1206

Query: 300  VNSVAA 305
             +S  A
Sbjct: 1207 ADSSTA 1212


>GSVIVT01011764001 assembled CDS
          Length = 1491

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 109/207 (52%), Gaps = 13/207 (6%)

Query: 1    MVACFRYASIDVHSVYLPPSKLEFNYD-NQEWIQKEVNEVRQRADLLFKEVQNSLHRISE 59
            MVA FRY+ ID+ SV+LPP+ LEFN    QEWI+KE +E+  + + ++ ++ + L RI +
Sbjct: 926  MVAFFRYSPIDILSVHLPPAMLEFNGQVQQEWIRKEASELLSKIETVYVKISDVLDRIEQ 985

Query: 60   KASSVGSQNGDLKASELATFRVVELEGILQKNKEEFEESFRNMPSKEVKVGRPVIDILEI 119
            K +S  +++ D   SEL    +++L+ +L + + ++    +         G+  +DILE+
Sbjct: 986  KTTSFRNESSD--KSELHN-HIMDLKDLLNRERNDYNNLLQPSGVGASPSGQVAVDILEL 1042

Query: 120  NKLRRQILFNCIAWNETLKDADRLSTTILHEGQRSFIPKLKEKFVNSVENLVEIDLSPKL 179
            N LRR +L     W++ LK+  +     + E  ++ +  +     N         LS K+
Sbjct: 1043 NCLRRSLLIGSHVWDQRLKNVTQKEEAYVDEKNKTLLESIPSPASN---------LSDKI 1093

Query: 180  GKSFSSCDSVPVDTKPVVNLNQGGNDS 206
              +++  D + +  + V  L+  GN +
Sbjct: 1094 DSAWTGTDQLLMKPQFVHTLHADGNQA 1120


>GSVIVT01036852001 assembled CDS
          Length = 1310

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 14/158 (8%)

Query: 1   MVACFRYASIDVHSVYLPPSKLEF-NYDNQEWIQKEVNEVRQRADLLFKEVQNSLHRISE 59
           MVA  RY+ +  ++V +PP KLEF N   QE ++KE+  V  +A  LF EV N+L +I+ 
Sbjct: 671 MVAVLRYSPVSTYAVDVPPHKLEFSNSIRQESLKKEMENVYMKAISLFTEVANALKKIAS 730

Query: 60  K-ASSVGSQNGDLKASELATFRVVELEGILQKNKEEFEESFRNMPSKEVKVGRPVIDILE 118
           + A S  +  G LK          ++E +L + + EFE + +    +  K  + +  +L 
Sbjct: 731 RFAGSTLNLGGSLK-------EFSDVEEMLSQERYEFEVNIQKAIVRNGKPEQAIYKLLS 783

Query: 119 INKLRRQILFNCIAWNETLK-----DADRLSTTILHEG 151
           +N+L  ++      W+  L      D+  + T+  + G
Sbjct: 784 LNRLLWELQLESCLWDRRLHALLSPDSSVVGTSFYNSG 821