Jatropha Genome Database

JcCA0317991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317991.20 + phase: 0 
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015002001 assembled CDS                                       600   e-172
GSVIVT01018051001 assembled CDS                                       311   3e-85
GSVIVT01027665001 assembled CDS                                        98   4e-21
GSVIVT01029206001 assembled CDS                                        82   4e-16
GSVIVT01025099001 assembled CDS                                        79   3e-15

>GSVIVT01015002001 assembled CDS
          Length = 337

 Score =  600 bits (1547), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/319 (93%), Positives = 303/319 (94%), Gaps = 14/319 (4%)

Query: 25  GPFPVEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASK 84
           GPFPVE LQ SGIA+LDIKKLKDAGLCTVESVAYSPRK+LLQIKGIS+AKVDKI+EAASK
Sbjct: 19  GPFPVEHLQASGIASLDIKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIVEAASK 78

Query: 85  LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTL 144
           LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGG+ETGSITEIYGEFRSGKTQLCHTL
Sbjct: 79  LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGLETGSITEIYGEFRSGKTQLCHTL 138

Query: 145 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ 204
           CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ
Sbjct: 139 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ 198

Query: 205 SRLLLEAASMMVET--------------RTDFSGRGELSARQMHLAKFLRSLQKLADEFG 250
           SRLLLEAASMMVET              RTDFSGRGELSARQMHLAKFLRSLQKLADEFG
Sbjct: 199 SRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFG 258

Query: 251 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 310
           VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL
Sbjct: 259 VAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCL 318

Query: 311 AEAEARFQISAEGVTDVKD 329
           AEA+ARFQISAEGVTDVKD
Sbjct: 319 AEADARFQISAEGVTDVKD 337


>GSVIVT01018051001 assembled CDS
          Length = 348

 Score =  311 bits (797), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/319 (50%), Positives = 212/319 (66%), Gaps = 19/319 (5%)

Query: 29  VEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASKLVPL 88
           +++L   GI A D+KKL+DAG+ T   +    +K L  IKG+S+AKVDKI EAA K+V  
Sbjct: 31  IDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNF 90

Query: 89  GFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTC 148
           G+ + S    +R  +++IT+GS+ LD++L GGIET +ITE +GEFRSGKTQL HTLCV+ 
Sbjct: 91  GYITGSDALLRRKSVVRITTGSQALDELLGGGIETSAITEAFGEFRSGKTQLAHTLCVST 150

Query: 149 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 208
           QLP    GG GK  YID EGTFRP R++ IA+RFG++   VL+N+ YARAY  +HQ  LL
Sbjct: 151 QLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLL 210

Query: 209 LEAASMMVET--------------RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 254
           L  A+ M E               R DF+GRGEL+ RQ  LA+ L  L K+A+EF VAV 
Sbjct: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLAQMLSRLTKIAEEFNVAVY 270

Query: 255 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 314
           +TNQV+A   G    + P+ KP GG+++AHA+T RL  RKG+GE+R+CKV  +P L EAE
Sbjct: 271 MTNQVIADPGGGVFISDPK-KPAGGHVLAHAATIRLMFRKGKGEQRVCKVFDAPNLPEAE 329

Query: 315 A----RFQISAEGVTDVKD 329
           A     FQI+  G+ D KD
Sbjct: 330 AISFPLFQITPGGIADAKD 348


>GSVIVT01027665001 assembled CDS
          Length = 346

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 46/270 (17%)

Query: 91  TSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQL 150
           T+   LH +   +  IT+   +LD IL GGI+   +TEI G    GKTQL   L V  Q+
Sbjct: 74  TAWDMLHEEE-SLKCITTSCVDLDDILGGGIKCKEVTEIGGVPGIGKTQLGIQLAVNVQI 132

Query: 151 PLDQGGGEGKAMYIDAEGTFRPQRLLQIAD--------------------RFGLNGADVL 190
           P++ GG  GKA+YID EG+F  +R LQIA+                    +      D L
Sbjct: 133 PVNYGGLGGKAIYIDTEGSFMLERSLQIAEACIEDMSGNSDFLQKDFQSCQVKAQPKDFL 192

Query: 191 ENVAYARA---------------YNTDHQSRLLLEAASMMVETRTDFSGRGELSARQMHL 235
           +N+ Y R                + ++H+   ++   S+    R DF    +L+ R   L
Sbjct: 193 QNIFYFRVCSYTEQIAMINYLDKFISEHKDVNVVIIDSVTFHFRQDFD---DLALRTRLL 249

Query: 236 AKFLRSLQKLADEFGVAVVITNQVVAQ-VDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 294
           +     L KLA +F +AVV+ NQV  +  +GS      Q+    G+  +H+ T R+ L  
Sbjct: 250 SGMALKLMKLAKKFSLAVVLLNQVTTKHTEGSF-----QLTLALGDSWSHSCTNRVILY- 303

Query: 295 GRGEERICKVISSPCLAEAEARFQISAEGV 324
             G+ER   +  SP L  A A + ++ +G+
Sbjct: 304 WNGDERYAYIDKSPSLRSASAPYSVTGKGI 333


>GSVIVT01029206001 assembled CDS
          Length = 260

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 109/258 (42%), Gaps = 49/258 (18%)

Query: 105 QITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI 164
           + T G   LD+ L GG+   SITE+  E  SGKTQLC  L ++ QLP   GG    ++YI
Sbjct: 17  KCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYI 76

Query: 165 DAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRTDFSG 224
            +E  F  +RL Q++  F           +Y+      H    L+   S+    R +F  
Sbjct: 77  HSEFPFPSRRLQQLSQSF---------RSSYS------HLPVRLIVIDSIAALFRGEFEN 121

Query: 225 RG-ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIG----- 278
              +L  R     K    L+ LA+ FG+AVV+TNQVV  V  +    G ++  +G     
Sbjct: 122 TPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFVGQAGGLNGLRVGNLGSLWSS 181

Query: 279 --------GNIMAHASTTRLALRKG--------------------RGEERICKVISSPCL 310
                   G   A+   +RL L +                     R   R   VI +P L
Sbjct: 182 GRRVCAALGLSWANCVNSRLFLSRNEEIVGEVTGLGGVGAGDTVSRLTRRHLHVIFAPHL 241

Query: 311 AEAEARFQISAEGVTDVK 328
            E+   F IS EGV  V+
Sbjct: 242 PESSCEFVISREGVLGVE 259


>GSVIVT01025099001 assembled CDS
          Length = 371

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 52/312 (16%)

Query: 63  ELLQIKGISDAKVDKIIEAASKLVPLGFTSASQLHAQRLE----IIQITSGSRELDKILE 118
           EL+++  +  A+V   +   S++V     +A  L  QR++       + +  + LD+ L 
Sbjct: 37  ELMELLDVGMARVTSAVAHISEIVSPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALG 96

Query: 119 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 178
           GGI  G +TE+ G    GKTQ C  L +   LP   GG +G+ +YIDAE  F  +R+++I
Sbjct: 97  GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEI 156

Query: 179 ADR-----FGLNG-----------------ADVLENVAYAR-AYNTDHQSRLLLEAASMM 215
             +     F + G                 ++  E++ + + +   +H   L++++ + +
Sbjct: 157 GSKSFPEIFHVEGMAKEACPLILVLRPTSLSEFTESLQHIKISLLQNHVKLLVIDSMAAL 216

Query: 216 VETRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ------------- 262
           V    D     +   RQ  L   +  ++ +A+   + +V+TNQV +Q             
Sbjct: 217 VTGEYD-----QGPTRQHSLGWHISFVKSVAEFSRIPIVVTNQVRSQSHDGTSQYSFQVE 271

Query: 263 -----VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARF 317
                VD    F    +  +G +  AHA T RL L    G +R  KV  SP        F
Sbjct: 272 SRGETVDDHTRFDSHLVAALGIH-WAHAVTIRLVLEAKAG-QRFLKVAKSPISPPLAFPF 329

Query: 318 QISAEGVTDVKD 329
            I+  G++ + D
Sbjct: 330 NITPSGISLLND 341