Jatropha Genome Database

JcCA0317991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317991.10 - phase: 0 /pseudo/partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015033001 assembled CDS                                       358   1e-99
GSVIVT01026819001 assembled CDS                                       168   3e-42

>GSVIVT01015033001 assembled CDS
          Length = 260

 Score =  358 bits (920), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/226 (76%), Positives = 197/226 (87%)

Query: 32  ADDEAVLYTASFEEMEEKFIKYQTAQWVMYSLLLILAWGIGLFMLLYLPVRRYILRKDIQ 91
           A+DE VLYTASF+EME+ F+KYQTAQWV+YSLLLILAWGIGLFMLLYLPVRR+ILRKDI+
Sbjct: 30  AEDETVLYTASFKEMEDNFVKYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRHILRKDIR 89

Query: 92  SRKLYLTPNAIVYKVTKPVAFPCFGVLKKEKHILLPSVADIVIEQGYLQSLFGVCSLRIE 151
           SR+LY+TPNAIVYK  KPV FPCFGVLKKEKH+LLPSVAD+VIEQGYLQSLFGV S+RIE
Sbjct: 90  SRRLYVTPNAIVYKYRKPVPFPCFGVLKKEKHVLLPSVADVVIEQGYLQSLFGVYSIRIE 149

Query: 152 NVGVRRPPSDDVQIQGVANPNAFKKAVLTRLSYMRNEFGSRQVSAIEDIPSLRIGHXXXX 211
           N GVRRPPSDDVQIQGVA P AF+KAVL RLS +R++  SRQVSAIED+PSLRIG     
Sbjct: 150 NEGVRRPPSDDVQIQGVAYPGAFRKAVLARLSDIRSDVLSRQVSAIEDVPSLRIGRSSTA 209

Query: 212 XXXXXXXLRHDLLPNSGDILLLQKLEEVGSSMKRVQSLIEEQHSQS 257
                  LRHD  P SG++++LQKLEEV SS+KRVQ+LIEEQHSQ+
Sbjct: 210 WMSPSKSLRHDSFPPSGELMILQKLEEVESSVKRVQTLIEEQHSQT 255


>GSVIVT01026819001 assembled CDS
          Length = 277

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 31/245 (12%)

Query: 35  EAVLYTASFEEMEEKFIKYQTAQWVMYSLLLILAWGIGLFMLLYLPVRRYILRKDIQSRK 94
           E +LYTASF+E+ E  ++Y T  W+  SLLL+LAWG+G+ MLLYLP +RY+L+KDI SRK
Sbjct: 35  EQILYTASFDELAENNLQYDTIIWMSISLLLVLAWGVGIIMLLYLPFKRYVLQKDISSRK 94

Query: 95  LYLTPNAIVYKVTKPVAFPCFGVLKKEKHILLPSVADIVIEQGYLQSLFGVCSLRIENVG 154
           L++TP  IVYKV++P   P +G +  EK + L  V DI+IEQG LQS++G+ +LRIE++ 
Sbjct: 95  LHVTPTQIVYKVSRPSYIPFWGDVTVEKQVPLSLVIDIIIEQGCLQSVYGIHTLRIESIA 154

Query: 155 -VRRPPSDDVQIQGVANPNAFKKAVLTRLSYMRNEFGSR--------------QVSAIED 199
             +  P D++ +QGV+NP   +K ++T  + +  E G+               +++++ +
Sbjct: 155 HGKAAPVDELLVQGVSNPGLLRKVIITEAAKVLQEVGTNWKPPALTGEGESVVRMTSLTE 214

Query: 200 IP---------SLRIGHXXXXXXXXXXXLRHDLLPNSGDILLLQKLEEVGSSMKRVQSLI 250
            P         SL+I              R  ++P  GD LLL KLEEV  S+K+++ LI
Sbjct: 215 GPAVLLRSPSKSLKITGSPRHTPAD----RKSIIP--GD-LLLNKLEEVTKSVKKIEFLI 267

Query: 251 EEQHS 255
           E+  +
Sbjct: 268 EKSQA 272