Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.40 - phase: 0 /partial
         (65 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013439001 assembled CDS                                       128   7e-31
GSVIVT01026435001 assembled CDS                                       113   2e-26

>GSVIVT01013439001 assembled CDS
          Length = 449

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVITGQPEQ+DNPWGI PFKKVVSLP+RIDPLQTSAVVSLHGRLYVRVPF
Sbjct: 385 VRVQSDPAGRLVITGQPEQVDNPWGIKPFKKVVSLPARIDPLQTSAVVSLHGRLYVRVPF 444

Query: 61  ERGSA 65
           E+GS 
Sbjct: 445 EKGSG 449


>GSVIVT01026435001 assembled CDS
          Length = 288

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVITG+PE  DNPWG+TPFKKVVSLPSRIDP QTSAVV+LHG+L+VRVPF
Sbjct: 225 VRVQSDPAGRLVITGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 284

Query: 61  ER 62
           E+
Sbjct: 285 EQ 286