Jatropha Genome Database

JcCA0317741.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.30 + phase: 0 /pseudo
         (289 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027625001 assembled CDS                                       165   2e-41
GSVIVT01019932001 assembled CDS                                       160   5e-40
GSVIVT01016497001 assembled CDS                                       156   9e-39
GSVIVT01036210001 assembled CDS                                       156   1e-38
GSVIVT01013438001 assembled CDS                                       131   4e-31
GSVIVT01013202001 assembled CDS                                       102   2e-22
GSVIVT01033765001 assembled CDS                                        78   4e-15
GSVIVT01036214001 assembled CDS                                        74   1e-13
GSVIVT01018513001 assembled CDS                                        70   1e-12
GSVIVT01019763001 assembled CDS                                        69   3e-12
GSVIVT01019937001 assembled CDS                                        67   6e-12
GSVIVT01013200001 assembled CDS                                        67   7e-12
GSVIVT01026888001 assembled CDS                                        67   7e-12
GSVIVT01027617001 assembled CDS                                        64   8e-11
GSVIVT01013426001 assembled CDS                                        62   3e-10

>GSVIVT01027625001 assembled CDS
          Length = 300

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 81  IIVTRDSPNALRSHVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPA 140
           II+TRDS NALRSHV+E++TG DI+++++ +AR+R RG+C+LSG+GTV NVTLRQPASP 
Sbjct: 99  IIITRDSANALRSHVMEIATGCDIMDSLNTFARRRQRGICILSGSGTVTNVTLRQPASP- 157

Query: 141 GSVVTLQGRFEILSLSGTVLXXXXXXXXXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLM 200
           G+VVTL GRFEILSLSG+ L          L+I+L              PLLASGPVV+M
Sbjct: 158 GAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIM 217

Query: 201 AASFANAVFERLPLDEEEGNVQV 223
           AASF NA +ERLPL++EE  V +
Sbjct: 218 AASFGNAAYERLPLEDEEPQVPI 240


>GSVIVT01019932001 assembled CDS
          Length = 240

 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 81  IIVTRDSPNALRSHVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPA 140
           II+TRDS NALR+HV+E++ G DIVE+V+ +AR+R RGVC++SG GTV NVTLRQPASP 
Sbjct: 46  IIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASP- 104

Query: 141 GSVVTLQGRFEILSLSGTVLXXXXXXXXXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLM 200
           G++VTL GRFEILSLSG+ L          L+I+L               LLASGPVV+M
Sbjct: 105 GAIVTLHGRFEILSLSGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGQLLASGPVVIM 164

Query: 201 AASFANAVFERLPLDEEE 218
           AASF+NA +ERLPL+EE+
Sbjct: 165 AASFSNAAYERLPLEEED 182


>GSVIVT01016497001 assembled CDS
          Length = 300

 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

Query: 81  IIVTRDSPNALRSHVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPA 140
           I++T++SPNALRSHVLE+S+GSDI E+++N+A++R RGV VLS +G V NVTLRQPA+P 
Sbjct: 100 IVITKESPNALRSHVLEISSGSDIAESIANFAQRRHRGVSVLSASGIVNNVTLRQPAAPG 159

Query: 141 GSVVTLQGRFEILSLSGTVLXXXXXXXXXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLM 200
           G V+TLQGRFEILSLSG  L          L+++L               L+ASGPV+++
Sbjct: 160 G-VITLQGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGSVVGALMASGPVIVI 218

Query: 201 AASFANAVFERLPLDEEEGNVQVQ 224
           AA+F+NA FERLPL++E  N  +Q
Sbjct: 219 AATFSNATFERLPLEDEPANEGIQ 242


>GSVIVT01036210001 assembled CDS
          Length = 275

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 100/138 (72%)

Query: 81  IIVTRDSPNALRSHVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPA 140
           I VTRDSPNALRSHV+EV+ GSDI E+++ +AR+R RGVCVLS +GTV NVTLRQP++P 
Sbjct: 84  IFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQRGVCVLSASGTVMNVTLRQPSAPG 143

Query: 141 GSVVTLQGRFEILSLSGTVLXXXXXXXXXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLM 200
           G+V+ L GRFEILSL+G  L          L+I+L               L+A+GPV+++
Sbjct: 144 GAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQAQVVGGSVVGSLIAAGPVMVI 203

Query: 201 AASFANAVFERLPLDEEE 218
           AA+F+NA +ERLPL++EE
Sbjct: 204 AATFSNATYERLPLEDEE 221


>GSVIVT01013438001 assembled CDS
          Length = 227

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 87/145 (60%), Gaps = 8/145 (5%)

Query: 1   MSGYEQTAGSRYVHQLLRPELHLQRPS-LP----VQLSPDSKD---NTSPQSKDHKXXXX 52
           M GYE  +GSRYVHQLL PELHLQRPS LP     Q   DS+D   +   Q  D +    
Sbjct: 66  MEGYEPGSGSRYVHQLLGPELHLQRPSSLPQHQATQQPSDSRDESPDDQEQRADTEEAAA 125

Query: 53  XXXXXXXXXXXXXXXXXXXXXXXXXXXXIIVTRDSPNALRSHVLEVSTGSDIVETVSNYA 112
                                       IIVTRDSPNALRSHVLEV+ G+D++E+V NYA
Sbjct: 126 ASSGGATTSSNRRPRGRPPGSKNKPKPPIIVTRDSPNALRSHVLEVAAGADVMESVLNYA 185

Query: 113 RKRGRGVCVLSGNGTVANVTLRQPA 137
           R+RGRGVCVLSG GTV NVTLRQPA
Sbjct: 186 RRRGRGVCVLSGGGTVMNVTLRQPA 210


>GSVIVT01013202001 assembled CDS
          Length = 298

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 99/229 (43%), Gaps = 47/229 (20%)

Query: 1   MSGYEQTAGSRYVHQLLRPELHLQRPSLPVQLSPDSKDNT----SPQSKDHKXXXXXXXX 56
           M+G +    SRY+HQL R +LHLQRP        D  +NT    +  S DH+        
Sbjct: 61  MAGLDLGTASRYIHQLHRSDLHLQRPQ-----DSDEDNNTNRGGAQYSGDHQDDVAHHGL 115

Query: 57  XXXXXXXXXXXXXXXX-------XXXXXXXXIIVTRDSPNALRSHVLEVSTGSDIVETVS 109
                                          +I+TR+S N LR+H+LEV  G D+ + V+
Sbjct: 116 ELVSANAGPGDIVARRPRGRPPGSKNRPKPPVIITRESANTLRAHILEVGNGCDVFDCVA 175

Query: 110 NYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEILSLSGTVLXXXXXXXXX 169
            YAR+R RG+C+LS +G+     L  PA P  +                           
Sbjct: 176 TYARRRQRGICILSLSGSF----LPPPAPPGAT--------------------------- 204

Query: 170 XLSIFLXXXXXXXXXXXXXXPLLASGPVVLMAASFANAVFERLPLDEEE 218
            L+IFL               L A+GPV+++AASF N  +ERLPLDEEE
Sbjct: 205 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEE 253


>GSVIVT01033765001 assembled CDS
          Length = 324

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           HV+ V+TG D+   + ++++K  RG+CVLS NG V+NVT+RQP S +G ++T +GRFEIL
Sbjct: 110 HVVTVNTGEDVASKILSFSQKGPRGICVLSANGAVSNVTIRQPGS-SGGILTYEGRFEIL 168

Query: 154 SLSGTVLXXXXXXX---XXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLMAASF 204
           SLSG+               LS+ L               L A+GP+ ++  SF
Sbjct: 169 SLSGSFTVSDSGGARSRTGGLSVSLAGPDGRVIGGGIAGILTAAGPIQIVVGSF 222


>GSVIVT01036214001 assembled CDS
          Length = 357

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           HV+ V++G D+ + +  + ++  R +C++S +G+++N +LRQPA+  G+V   +GRFEIL
Sbjct: 135 HVITVASGEDVAQKIMFFMQQSKREICIMSASGSISNASLRQPATSGGNVA-YEGRFEIL 193

Query: 154 SLSGTVLXXXXXXXXXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLMAASF 204
           SL+G+ +          LS+ L              PL A+GPV ++  +F
Sbjct: 194 SLTGSYVRTEIGGRTGGLSVCLSNTDGEIIGGGVGGPLKAAGPVQVIVGTF 244


>GSVIVT01018513001 assembled CDS
          Length = 323

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           HV+ V+ G D+   + +++++  R +C+LS NG ++NVTLRQP S +G  +T +GRFEIL
Sbjct: 125 HVITVNAGEDVTMKIISFSQQGSRAICILSANGAISNVTLRQPNS-SGGTLTYEGRFEIL 183

Query: 154 SLSGTVL 160
           SLSG+ +
Sbjct: 184 SLSGSFM 190


>GSVIVT01019763001 assembled CDS
          Length = 309

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 90  ALRSHVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGR 149
           A   HV+ ++ G DI   + +++++R R +C+LS +GTV+ VTLRQP S +G+ VT +GR
Sbjct: 124 AFAPHVISMAVGEDIATRILSFSQQRPRALCILSASGTVSAVTLRQPTSSSGT-VTYEGR 182

Query: 150 FEILSLSGTVLXXXXXXXXX---XLSIFLXXXXXXXXXXXXXXPLLASGPVVLMAASF 204
           FEIL LSG+ L             +S+ L               L+A+ PV ++A SF
Sbjct: 183 FEILCLSGSYLPAETGGPRNRIGGISVSLCSPDGHVIGGGVGGMLIAASPVQVVACSF 240


>GSVIVT01019937001 assembled CDS
          Length = 261

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           H++ V++G D+   + +++++  R +C+LS NG +++VTLRQP S +G  +T +GRFEIL
Sbjct: 80  HIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDS-SGGTLTYEGRFEIL 138

Query: 154 SLSGTVL 160
           SLSG+ +
Sbjct: 139 SLSGSFM 145


>GSVIVT01013200001 assembled CDS
          Length = 353

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           HV+ V+ G DI   +  ++++  R VC+LS NG + NVTLRQPA  +G  ++ +GRF+I+
Sbjct: 155 HVITVNVGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAM-SGGTISYEGRFDII 213

Query: 154 SLSGTVL 160
           SLSG+ L
Sbjct: 214 SLSGSFL 220


>GSVIVT01026888001 assembled CDS
          Length = 345

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           HV+ V+ G D+   + +++++  R +C+LS NG V+ VTLRQP++ +G  VT +GRFEIL
Sbjct: 162 HVITVAVGEDVATKIMSFSQQGPRAICILSANGAVSTVTLRQPST-SGGTVTYEGRFEIL 220

Query: 154 SLSGTVL 160
            LSG+ L
Sbjct: 221 CLSGSYL 227


>GSVIVT01027617001 assembled CDS
          Length = 334

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEIL 153
           H++ V+ G D+   + +++++  R VC+LS NG ++NVTLRQ  S +G  +T +GRFEIL
Sbjct: 130 HIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDS-SGGTLTYEGRFEIL 188

Query: 154 SLSGTVLXXXXXXX---XXXLSIFLXXXXXXXXXXXXXXPLLASGPVVLMAASF 204
           SL+G+ +             +S+ L               L+A+ PV+++  SF
Sbjct: 189 SLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVGSF 242


>GSVIVT01013426001 assembled CDS
          Length = 353

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 94  HVLEVSTGSDIVETVSNYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLQGRFEI 152
           HV+ V  G D+   + ++++   R VC+LS NG ++NVTLRQPA+ +G  VT +GRFEI
Sbjct: 165 HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPAT-SGGTVTYEGRFEI 222