Jatropha Genome Database

JcCA0317741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.20 + phase: 0 
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013436001 assembled CDS                                       162   2e-41

>GSVIVT01013436001 assembled CDS
          Length = 97

 Score =  162 bits (411), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/94 (81%), Positives = 85/94 (90%), Gaps = 1/94 (1%)

Query: 1  MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXX- 59
          M+S+WRR+LGN+RSFIGN MGGLRGGSNLASWVVAGTLAYFLWVKPSQ+L+REQ+ER   
Sbjct: 1  MASSWRRSLGNMRSFIGNCMGGLRGGSNLASWVVAGTLAYFLWVKPSQELRREQEERAAL 60

Query: 60 XXXXDPYRYVEKRKPIPDPQETGLIYGNKNKTKK 93
              DPYRYVEKRKPIPDPQETGLIYGNKN+T K
Sbjct: 61 AAASDPYRYVEKRKPIPDPQETGLIYGNKNRTNK 94