Jatropha Genome Database

JcCA0317741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.10 + phase: 1 /partial
         (195 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013435001 assembled CDS                                       342   5e-95
GSVIVT01026444001 assembled CDS                                       339   5e-94
GSVIVT01023852001 assembled CDS                                       338   9e-94

>GSVIVT01013435001 assembled CDS
          Length = 541

 Score =  342 bits (878), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 166/195 (85%), Positives = 179/195 (91%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKKPAAVNWIEGRGKSVVCEA+IKE+VV+ VLKTN+A+LVELNMLKN         
Sbjct: 347 NFCSDKKPAAVNWIEGRGKSVVCEAVIKEDVVRKVLKTNIAALVELNMLKNLAGSAVAGA 406

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHAGNIVSAIFIATGQDPAQN+ES HCITMMEAVNDGKDLH+SV+MPS+EVGTVG
Sbjct: 407 LGGFNAHAGNIVSAIFIATGQDPAQNVESCHCITMMEAVNDGKDLHISVTMPSVEVGTVG 466

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQL SQSACLNLLGVKGASKESPGSNS+LLATI+AGSVLAGELSLMSAIAAGQLV SH
Sbjct: 467 GGTQLPSQSACLNLLGVKGASKESPGSNSKLLATIIAGSVLAGELSLMSAIAAGQLVKSH 526

Query: 181 MKYNRSSKDVSRVAS 195
           MKYNRSSKDVS+VAS
Sbjct: 527 MKYNRSSKDVSKVAS 541


>GSVIVT01026444001 assembled CDS
          Length = 551

 Score =  339 bits (869), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 165/195 (84%), Positives = 179/195 (91%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKKPAAVNWIEGRGKSVVCEAII +EVV+ VLKT+VA+LVELNMLKN         
Sbjct: 357 NFCSDKKPAAVNWIEGRGKSVVCEAIIGDEVVRKVLKTSVAALVELNMLKNLTGSAVAGA 416

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIVSA++IATGQDPAQN+ESSHCITMMEAVNDGKDLH+SV+MPSIEVGTVG
Sbjct: 417 LGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVG 476

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLV SH
Sbjct: 477 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSH 536

Query: 181 MKYNRSSKDVSRVAS 195
           +KYNRSS+DVS++AS
Sbjct: 537 LKYNRSSRDVSKIAS 551


>GSVIVT01023852001 assembled CDS
          Length = 553

 Score =  338 bits (867), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 166/192 (86%), Positives = 176/192 (91%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           NYCSDKKP AVNWIEGRGKSVVCEAIIKEEVVK VLKTNVA+LVELNMLKN         
Sbjct: 361 NYCSDKKPTAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLTGSAMAGA 420

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIVSA++IATGQDPAQN+ESSHCITMMEAVNDGKDLHVSV+MPSIEVGTVG
Sbjct: 421 LGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVG 480

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGVKGA+KESPG+N+RLLATIVAGSVLAGELSLMSAIAAGQLV SH
Sbjct: 481 GGTQLASQSACLNLLGVKGANKESPGTNARLLATIVAGSVLAGELSLMSAIAAGQLVRSH 540

Query: 181 MKYNRSSKDVSR 192
           MKYNRS+KDVS+
Sbjct: 541 MKYNRSNKDVSK 552