Jatropha Genome Database

JcCA0317641.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317641.20 + phase: 0 /pseudo/partial
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003355001 assembled CDS                                       461   e-130
GSVIVT01037723001 assembled CDS                                       427   e-120
GSVIVT01002067001 assembled CDS                                       396   e-111
GSVIVT01027681001 assembled CDS                                        47   8e-06

>GSVIVT01003355001 assembled CDS
          Length = 367

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/268 (83%), Positives = 242/268 (90%), Gaps = 2/268 (0%)

Query: 1   MQRDNSTSAPSTP--RLRHRRRSNEVIPEASKENGGHLLLHDRNKYKSMWIRAYSTIWMI 58
           MQ+DN+TSA  TP  R+R R+RSNEV PEASK NG HLL  DRNKY+SMWIRA ST+WMI
Sbjct: 1   MQKDNTTSALPTPAARVRQRKRSNEVPPEASKANGNHLLADDRNKYRSMWIRARSTVWMI 60

Query: 59  GGFAFIVYMGHLYITAMVVVIQIFMAKELFNLLRKAHEDRHLPGFRLLNWHFFFTAMLFV 118
           GGFA I+YMGHLYI AMVVVIQIFMA+ELF LLRK HED HLPGFRLLNWHFFFTAMLFV
Sbjct: 61  GGFALIIYMGHLYIWAMVVVIQIFMARELFCLLRKTHEDSHLPGFRLLNWHFFFTAMLFV 120

Query: 119 YGRILSQRLVNTVTSDKFLYQLVSSLIKYHMAICYFLYIAGFMWFILTLKKKMYKYQFGQ 178
           YGRILSQRLVNTVT DKFLY+LV +LIKYHM  CYFLYIAGFMWFILTLKKKMYKYQFGQ
Sbjct: 121 YGRILSQRLVNTVTPDKFLYKLVGNLIKYHMVTCYFLYIAGFMWFILTLKKKMYKYQFGQ 180

Query: 179 YAWTHMILIVVFTQSSFTVANIFEGIFWFLLPATLIVINDIFAYIFGFFFGKTPLIKLSP 238
           YAWTHMILIVVFTQS+FTVANIFEGIFWFLLPA+LIVINDI AYIFGFFFG+TPLIKLSP
Sbjct: 181 YAWTHMILIVVFTQSAFTVANIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSP 240

Query: 239 KKTWEGFIGASVTTMISAFVLCVLCRKF 266
           KKTWEGFIGAS+ T+ISAFVL  +  +F
Sbjct: 241 KKTWEGFIGASIATIISAFVLANIMGRF 268


>GSVIVT01037723001 assembled CDS
          Length = 433

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/268 (80%), Positives = 236/268 (88%), Gaps = 2/268 (0%)

Query: 1   MQRDNSTSAPSTP--RLRHRRRSNEVIPEASKENGGHLLLHDRNKYKSMWIRAYSTIWMI 58
           MQ+D + S   TP  R+RHRRRSNEV  E  K NG HLL++D NKYKSMWIRAYS++WMI
Sbjct: 1   MQKDQNMSVSPTPTARIRHRRRSNEVPSEFGKSNGSHLLVNDHNKYKSMWIRAYSSMWMI 60

Query: 59  GGFAFIVYMGHLYITAMVVVIQIFMAKELFNLLRKAHEDRHLPGFRLLNWHFFFTAMLFV 118
           GGF  I+Y+GHLYI AMVVVIQIFMA+ELFNLLR+AHED+HLPGFRLLNWHFFFTAMLFV
Sbjct: 61  GGFIAIIYLGHLYIWAMVVVIQIFMARELFNLLRRAHEDKHLPGFRLLNWHFFFTAMLFV 120

Query: 119 YGRILSQRLVNTVTSDKFLYQLVSSLIKYHMAICYFLYIAGFMWFILTLKKKMYKYQFGQ 178
           YGRILSQ+LVNT+++DKF Y+LVS L+KY M ICYFLYIAGFMWFILTLKKKMYKYQFGQ
Sbjct: 121 YGRILSQQLVNTMSTDKFFYKLVSGLLKYQMVICYFLYIAGFMWFILTLKKKMYKYQFGQ 180

Query: 179 YAWTHMILIVVFTQSSFTVANIFEGIFWFLLPATLIVINDIFAYIFGFFFGKTPLIKLSP 238
           YAWTHMILIVVFTQSSF V NIFEGIFWFLLPA+LIVINDI AY FGFFFGKTPLIKLSP
Sbjct: 181 YAWTHMILIVVFTQSSFIVGNIFEGIFWFLLPASLIVINDIAAYFFGFFFGKTPLIKLSP 240

Query: 239 KKTWEGFIGASVTTMISAFVLCVLCRKF 266
           KKTWEGFIG SV T+ISAFVL  +   F
Sbjct: 241 KKTWEGFIGGSVATVISAFVLANILGHF 268


>GSVIVT01002067001 assembled CDS
          Length = 1078

 Score =  396 bits (1017), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/230 (83%), Positives = 207/230 (90%), Gaps = 2/230 (0%)

Query: 1   MQRDNSTSAPSTP--RLRHRRRSNEVIPEASKENGGHLLLHDRNKYKSMWIRAYSTIWMI 58
           MQ+DN+TSA  TP  R+R R+RSNEV PEASK NG HLL  DRNKY+SMWIRA ST+WMI
Sbjct: 1   MQKDNTTSALPTPAARVRQRKRSNEVPPEASKANGNHLLADDRNKYRSMWIRARSTVWMI 60

Query: 59  GGFAFIVYMGHLYITAMVVVIQIFMAKELFNLLRKAHEDRHLPGFRLLNWHFFFTAMLFV 118
           GGFA I+YMGHLYI AMVVVIQIFMA+ELF LLRK HED HLPGFRLLNWHFFFTAMLFV
Sbjct: 61  GGFALIIYMGHLYIWAMVVVIQIFMARELFCLLRKTHEDSHLPGFRLLNWHFFFTAMLFV 120

Query: 119 YGRILSQRLVNTVTSDKFLYQLVSSLIKYHMAICYFLYIAGFMWFILTLKKKMYKYQFGQ 178
           YGRILSQRLVNTVT DKFLY+LV +LIKYHM  CYFLYIAGFMWFILTLKKKMYKYQFGQ
Sbjct: 121 YGRILSQRLVNTVTPDKFLYKLVGNLIKYHMVTCYFLYIAGFMWFILTLKKKMYKYQFGQ 180

Query: 179 YAWTHMILIVVFTQSSFTVANIFEGIFWFLLPATLIVINDIFAYIFGFFF 228
           YAWTHMILIVVFTQS+FTVANIFEGIFWFLLPA+LIVINDI AYIF  ++
Sbjct: 181 YAWTHMILIVVFTQSAFTVANIFEGIFWFLLPASLIVINDIAAYIFATYY 230


>GSVIVT01027681001 assembled CDS
          Length = 397

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%)

Query: 203 GIFWFLLPATLIVINDIFAYIFGFFFGKTPLIKLSPKKTWEGFIGASVTTMISAFVLCVL 262
           G+   L+  + I+  D +A++ G  FG+TPL  +SPKKTWEG I      + ++ +L  +
Sbjct: 261 GLVVTLISISSIIAADTYAFLGGKAFGRTPLTNISPKKTWEGVIAGLGGCIATSVILSKI 320

Query: 263 CRKFVAMSRSI 273
            R   ++S +I
Sbjct: 321 FRWPTSLSSAI 331