Jatropha Genome Database

JcCA0317631.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317631.40 - phase: 0 /pseudo/partial
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010591001 assembled CDS                                        65   6e-11

>GSVIVT01010591001 assembled CDS
          Length = 84

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 37/50 (74%)

Query: 50 DFFLTSSKMNKTQALDMLPYSDNICLVDASFSGLRPNLASTWSRIAGPPG 99
          DF L SSK+N T ALDMLPYS N CLV +SF   + + AST SRIAGPPG
Sbjct: 35 DFLLISSKINNTHALDMLPYSLNTCLVASSFFLSKLSFASTASRIAGPPG 84