Jatropha Genome Database

JcCA0317631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317631.30 + phase: 0 /partial
         (59 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010590001 assembled CDS                                        94   2e-20
GSVIVT01010572001 assembled CDS                                        93   3e-20
GSVIVT01010589001 assembled CDS                                        92   4e-20
GSVIVT01010570001 assembled CDS                                        85   5e-18
GSVIVT01000521001 assembled CDS                                        85   6e-18

>GSVIVT01010590001 assembled CDS
          Length = 392

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 1  MVTVEEVRKAQRAQGPATVLAIGTATPSNCVDQSTYPDYYFRITNSEHKVELKEKFKRM 59
          M ++EE+R AQRA+GPAT+LAIGTATP +CV QS Y DYYFR+T SEH  ELK+KF R+
Sbjct: 1  MASIEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRI 59


>GSVIVT01010572001 assembled CDS
          Length = 427

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 1  MVTVEEVRKAQRAQGPATVLAIGTATPSNCVDQSTYPDYYFRITNSEHKVELKEKFKRM 59
          M +V+E+R AQRA+GPATVLAIGTATP NC+ QS + DYYFR+T SEH  ELK+KF R+
Sbjct: 1  MASVDEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRI 59


>GSVIVT01010589001 assembled CDS
          Length = 392

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 1  MVTVEEVRKAQRAQGPATVLAIGTATPSNCVDQSTYPDYYFRITNSEHKVELKEKFKRM 59
          M +VEE+R AQRA+GPAT+LAIGTATP +CV QS Y DYYF++T SEH  ELK+KF R+
Sbjct: 1  MASVEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTELKKKFNRI 59


>GSVIVT01010570001 assembled CDS
          Length = 108

 Score = 85.1 bits (209), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 1  MVTVEEVRKAQRAQGPATVLAIGTATPSNCVDQSTYPDYYFRITNSEHKVELKEKFKRM 59
          M +VE++R AQ A+GP+T+LAIGTATP NCV QS Y DYYFR+T SE   ELK+KF R+
Sbjct: 1  MASVEKIRNAQCAKGPSTILAIGTATPENCVYQSDYADYYFRVTKSEQLTELKKKFNRI 59


>GSVIVT01000521001 assembled CDS
          Length = 99

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 20 LAIGTATPSNCVDQSTYPDYYFRITNSEHKVELKEKFKRM 59
          +AIGTATP NCVDQSTYPDYYFRITNSEHK ELKEKFKRM
Sbjct: 1  MAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFKRM 40