Jatropha Genome Database

JcCA0317621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317621.20 + phase: 0 /partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007720001 assembled CDS                                       353   5e-98
GSVIVT01032439001 assembled CDS                                       306   8e-84

>GSVIVT01007720001 assembled CDS
          Length = 394

 Score =  353 bits (906), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 197/242 (81%)

Query: 30  PIYQFREFNCSVFAAEKNGSSSSRKSTTFVTALSCVREKSSTPTTAFNELIESLISRVDL 89
           P+Y    F          G+   R     VT         S P T+FN+LIESLISRVDL
Sbjct: 9   PVYLLSSFTGRYPQKCLFGNPYVRFEQRCVTKTLVASRPISAPPTSFNKLIESLISRVDL 68

Query: 90  TESEAETSLYYLLNDGNEALISAFLVLLRAKGETFEEIVGLARAMIKHARTVEGLVDAVD 149
           TESEAE SL +LL++ NEALISAFLVLLRAKGET+EE+VGLARAMIK +R VEGL DAVD
Sbjct: 69  TESEAEASLDFLLSEANEALISAFLVLLRAKGETYEEVVGLARAMIKCSRKVEGLKDAVD 128

Query: 150 IVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGIIIDLDPEG 209
           IVGTGGDGANTVNISTGASILAAACG  VAKQGNRSSSSACGSADVLEALGI I+LDP+G
Sbjct: 129 IVGTGGDGANTVNISTGASILAAACGANVAKQGNRSSSSACGSADVLEALGIAIELDPQG 188

Query: 210 VSKCVNEAGIGFMMSPKYHPAMKIVSPVRKKLKVKTVFNILGPMLNPARVPFAVVGVYKE 269
           V++CVNEAGIGFMM+P YHPAMKIV PVRKKLKVKTVFNILGPMLNPARVPFAVVGV+ E
Sbjct: 189 VTRCVNEAGIGFMMAPIYHPAMKIVGPVRKKLKVKTVFNILGPMLNPARVPFAVVGVFTE 248

Query: 270 DL 271
           DL
Sbjct: 249 DL 250


>GSVIVT01032439001 assembled CDS
          Length = 423

 Score =  306 bits (783), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 167/219 (76%), Positives = 184/219 (84%)

Query: 53  RKSTTFVTALSCVREKSSTPTTAFNELIESLISRVDLTESEAETSLYYLLNDGNEALISA 112
           R S +  T L   R     P T+  +L+E L++R D +E EAE SL +LLNDG+EALISA
Sbjct: 41  RNSKSIHTVLPSSRAPLDLPITSSRQLLECLLNREDFSEEEAEESLNFLLNDGSEALISA 100

Query: 113 FLVLLRAKGETFEEIVGLARAMIKHARTVEGLVDAVDIVGTGGDGANTVNISTGASILAA 172
           FLVLLRAKGETFEE+VGLARAMIK    VEG+ DAVDIVGTGGDGANTVNISTGA+ILAA
Sbjct: 101 FLVLLRAKGETFEEVVGLARAMIKCCSKVEGVYDAVDIVGTGGDGANTVNISTGAAILAA 160

Query: 173 ACGTKVAKQGNRSSSSACGSADVLEALGIIIDLDPEGVSKCVNEAGIGFMMSPKYHPAMK 232
           ACG KVAKQGNRSSSSACGSADVLEALG+IIDLDPEGV KCV E GIGFMMSPKYH AMK
Sbjct: 161 ACGAKVAKQGNRSSSSACGSADVLEALGVIIDLDPEGVKKCVEEVGIGFMMSPKYHGAMK 220

Query: 233 IVSPVRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDL 271
           I +PVRKKL VKTVFNILGPMLNPARVPFAVVGVY++ +
Sbjct: 221 IFAPVRKKLGVKTVFNILGPMLNPARVPFAVVGVYEDSM 259