Jatropha Genome Database

JcCA0317621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317621.10 + phase: 0 
         (289 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007721001 assembled CDS                                       343   7e-95
GSVIVT01017668001 assembled CDS                                       149   1e-36
GSVIVT01012219001 assembled CDS                                       122   2e-28
GSVIVT01006040001 assembled CDS                                        94   6e-20
GSVIVT01020110001 assembled CDS                                        92   2e-19
GSVIVT01012680001 assembled CDS                                        80   1e-15

>GSVIVT01007721001 assembled CDS
          Length = 242

 Score =  343 bits (879), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 162/212 (76%), Positives = 185/212 (87%), Gaps = 3/212 (1%)

Query: 57  INDVLMFHISSGSYRVLEIDYAYQSLTLHEPHLSNCDTIVLGSKGNGFSVEPWRSPYFNP 116
           +NDVLMFHI+SGSYRVL+IDYAYQ+LTL +PH+S C++IVLG KGNGF++E WR+PY NP
Sbjct: 1   MNDVLMFHITSGSYRVLDIDYAYQALTLDDPHMSTCESIVLGGKGNGFAIEHWRAPYLNP 60

Query: 117 TADNVFMLIGCSAKSPLFQGFPGKHLPCRNVSGMGCEEYYGCPAWSVVGRRHAGSMFGSG 176
            ADNVFML+GCSA+SPLFQGFP KHLPCRNVSGMGCEEYY C AW V G +  GS  G+G
Sbjct: 61  AADNVFMLLGCSAQSPLFQGFPSKHLPCRNVSGMGCEEYYWCSAWGVFGPKKLGS--GTG 118

Query: 177 PPECCAVAFEAIKAINLSKLECEGYSSAYSLAPLRVDGPSEWSFGIRVKYSVQENEEFCR 236
           PPECCAV FEAIKAINL++LECEGYSSAYSLAPLR  GP  WS+GIRV+YSVQ N EFCR
Sbjct: 119 PPECCAVPFEAIKAINLTRLECEGYSSAYSLAPLREIGPGGWSYGIRVRYSVQGN-EFCR 177

Query: 237 ACEATGGTCGYGSDGIRQMCMCADFNSTSNCD 268
           ACEATGG CGYGSDG+R++C+C   NSTSNCD
Sbjct: 178 ACEATGGACGYGSDGVRELCLCGSSNSTSNCD 209


>GSVIVT01017668001 assembled CDS
          Length = 293

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 17/253 (6%)

Query: 25  PCRSYCGNITIDYPFSLQYGCGHPGFRDLLFCINDVLMFHISSGSYRVLEIDYAYQSLTL 84
           PCRS+CG I + YPF +  GCG P ++ +L C  D L F   SG+Y+V  IDY  +++ +
Sbjct: 30  PCRSFCGTIPVKYPFGVDEGCGAPQYKGMLNCSTD-LFFLTPSGNYKVQAIDYDKKTMVV 88

Query: 85  HEPHLSNCDTIVLGSKGNGFSVEPWRSPYFNPTADNVFMLIGCSAKSPLFQGFPGKHLPC 144
           ++P +S C  +      + F +   +S    P +D VF+L+ CS  SP+   +  K L C
Sbjct: 89  YDPAMSTCSIL---QPHHDFLMSDIQSAMIPPASDTVFVLLNCSIDSPVLNHY--KSL-C 142

Query: 145 RNVSGMGCEEYY-GCPAWSVVGRRHAGSMFGSGPPECCAVAFEAIKAINLSKLECEGYSS 203
            N SG  C+E Y  C ++ +        +  +  P CC   ++ +K ++++ L+C  Y+S
Sbjct: 143 FNFSGHSCDELYSACTSFKLF------HLLSNSSPPCCFTGYDTVKYMSMNILDCSHYTS 196

Query: 204 AYSLAPLRVDGPSEWSFGIRVKYSVQENEEFCRACEATGGTCGYGSDGIRQMCMC-ADFN 262
            Y    L+  GP +WS+GI++ Y++ +    C  C  +GGTCG+ +     +C+C +  N
Sbjct: 197 VYDTDGLKGIGPLDWSYGIKLSYAIPDTG--CERCTRSGGTCGFDTQTEGTLCICSSSTN 254

Query: 263 STSNCDSGTLKQT 275
           ST  C  G+L  T
Sbjct: 255 STRECAGGSLAST 267


>GSVIVT01012219001 assembled CDS
          Length = 967

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 23/249 (9%)

Query: 26  CRSYCGNITIDYPFSLQYGCGHPGFRDLLFCINDVLMFHISSGSYRVLEIDYAYQSLTLH 85
           C   CGNIT+ +PF   +GCGHP F   + C +  L F   +G Y V  IDY+  ++ ++
Sbjct: 702 CSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSGTLQFSTLTGIYTVASIDYSSSTIIVN 761

Query: 86  EPHLSNCDTIVLGSKGNGFSVEPWRSPYFNPTADNVFMLIGCSAKSPLFQGFPGKHLPCR 145
           +P +S C ++        FS++  R+  F   AD+VF+L+GCS  SP+F     + L C 
Sbjct: 762 DPLMSTCTSM---QNSGSFSLD--RASPFTIMADDVFVLLGCSTTSPVFD--LNEDL-CD 813

Query: 146 NVSGM-GCEEYYGCPAWSVVGRRHAGSMFGSGPPECCAV--AFEAIKA---INLSKLECE 199
             SG   C   Y C   + +G      +  + P   C V  + + + +   ++L KL+C 
Sbjct: 814 TGSGSHACRGLYSCKGVTGIG------LDPNAPTSTCCVYNSLDGVGSGYGLDLPKLQCS 867

Query: 200 GYSSAYSLAPLRVDGPSEWSFGIRVKYSVQENEEFCRACEATGGTCGYGSDGIRQMCMCA 259
            Y+S Y L     D P +W FGI ++Y+  +++  C+ CEA+GG CG+        C+C 
Sbjct: 868 SYASIYGLGDDEGD-PMKWKFGISLQYNSSDSDA-CKDCEASGGLCGFTGLDESFACICQ 925

Query: 260 D-FNSTSNC 267
           +  N+T+NC
Sbjct: 926 NGVNTTTNC 934


>GSVIVT01006040001 assembled CDS
          Length = 300

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 46/265 (17%)

Query: 26  CRSYCGNITIDYPFSLQYGCGHPGFRDLLFCIN-----DVLMFHISSGSYRVLEIDYAYQ 80
           CR  CG++++ +PF    GCG P F+  + C       D L+    +G Y +  I Y   
Sbjct: 29  CRDTCGSLSVKFPFGTGVGCGSPRFQPYISCSQSSDGGDQLLLRTHTGVYPITSISYEAA 88

Query: 81  SLTLHEPHLSNCDTIVLGSKGNGFSVEPWRSPY-FNPTADNVFMLIGC-----SAKSPLF 134
           + T+  P +SNC T +  S   G     W SP+   P+A   F+L+ C     S  SP  
Sbjct: 89  AFTVTPPLMSNC-TSMQPSPNLGLD---WASPFQLGPSA---FILLSCPPSLTSKASPPI 141

Query: 135 QGFPGKHLPCRNVSGMGCEEYYGCPAWSVVGRRHAGSMFGSGPP--ECCAVA---FEAIK 189
                 HL         C   Y CP+   +G      +F   PP   CC  +   F    
Sbjct: 142 CDPSLSHL---------CASIYTCPSVVSLGL----PLF---PPTNSCCVYSPANFNTKG 185

Query: 190 AINLSKLECEGYSSAYSLAPLRVDGPSEWSFGIRVKYSVQENEEF-----CRACEATGGT 244
            ++L  L+C  Y+S  +L     D P+ W +G+  KY+  + + +     C AC+++GG 
Sbjct: 186 ELDLHALKCAAYASVVTLGDYPTD-PTRWEYGVVFKYTQGKFDNYGMDTKCYACDSSGGV 244

Query: 245 CGYGSDGIRQMCMCAD-FNSTSNCD 268
           CGY       +C+C + FN++SNC+
Sbjct: 245 CGYAPPSNSFVCVCGNGFNTSSNCN 269


>GSVIVT01020110001 assembled CDS
          Length = 369

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 16/250 (6%)

Query: 26  CRSYCGNITIDYPFSLQYGCGHPGFRDLLFCINDVLMFHISSGSYRVLEIDYAYQSLTLH 85
           C+  CGN  + YPF    GCG P F+  + C  + L F   +G Y +  IDY  Q L + 
Sbjct: 96  CQRTCGNQHLKYPFGSGPGCGDPRFQPYVTCSQEKLTFITHTGYYTITNIDYNSQVLCIT 155

Query: 86  EPHLSNCDTIVLGSKGNGFSVEPWRSPYFNPTADNVFMLIGCS-AKSPLFQGFPGKHLPC 144
           +P +S C +    SKG G     W +P F+    NVF L+ CS   SP+++  P      
Sbjct: 156 DPSMSTC-SCAQPSKGFGLD---WNAP-FSFHDGNVFALLDCSITSSPIYK--PDGLYGG 208

Query: 145 RNVSGMGCEEYYGCPAWSVVGRRHAGSMFGSGPPECCA---VAFEAIKAINLSKLECEGY 201
            N + +   +  G P  S++       +       CC    V       ++L KL+C  Y
Sbjct: 209 GNSTLVPLCDSEGAPICSLLYSCRPIIVLNIPISTCCVYTPVDLGPSFEMDLQKLKCTSY 268

Query: 202 SSAYSLAPLRVDGPSEWSFGIRVKYSVQENEEF---CRACEATGGTCGYGSDGIRQMCMC 258
           S  YS    +   P  W +G+ +KY    N ++   C  CE + G CGY  D    +C C
Sbjct: 269 SGFYSYNG-QDSNPQSWKYGVALKYKFSINNDYPGACADCEKSNGVCGYTGDYNSFICNC 327

Query: 259 -ADFNSTSNC 267
               N+T NC
Sbjct: 328 PGGVNTTGNC 337


>GSVIVT01012680001 assembled CDS
          Length = 339

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 32/275 (11%)

Query: 21  AHLNPCRSYCGNITIDYPFSLQYGCGHPGFRDLLFCIND-VLMFHISSGSYRVLEIDYAY 79
           A  + CR+ CG I I+YPF +  GCG P +R +L C +   L     SG Y V  + Y+ 
Sbjct: 40  AQASLCRTSCGGIPINYPFGIDDGCGSPYYRHILVCPDSGQLELRTPSGRYPVRSLSYSD 99

Query: 80  QSLTLHEPHLSNCDTIVLGSKGNGFSVEPWRSPYFNPTADNVFMLIGCSAKSPLFQGFPG 139
             + + +P + NC           FS++   S +F+ +  N ++   CS    + +  P 
Sbjct: 100 PHILVSDPFMWNCQDGDAFRPTRPFSLD--TSTHFSLSPQNDYLFFNCSEDDVIVEPKP- 156

Query: 140 KHLPCRNVSGMGCEEY-----YGCPAWSVVGRRHAGSMFGSGPPECCAVAFEAIKAINLS 194
                     + CE +       C + S + R         G   CC+   +A +++ L 
Sbjct: 157 ----------IFCERFPDRCDSSCDSASYLCRHLPECASALGGSSCCSYYPKATESLRLM 206

Query: 195 KLECEGYSSAYSLAPLRVDG---PSEW--SFGIRVKYSVQENEEFCRACEAT---GGTCG 246
              C  Y+S Y     R  G   P +    +G+RV + +      C  C+ T   GGTCG
Sbjct: 207 LKYCASYTSVY----WRSSGGNPPDDQIPEYGVRVDFDIPVTTR-CLQCQDTTKGGGTCG 261

Query: 247 YGSDGIRQMCMCADFNSTSNCDSGTLKQTYTVTIL 281
           + +     +C+C   N+T+ C    ++    + ++
Sbjct: 262 FDTQTQDFLCLCEQGNTTTYCKDLVVRHNKRIGVI 296