Jatropha Genome Database

JcCA0317481.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317481.40 - phase: 2 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037715001 assembled CDS                                       293   3e-80
GSVIVT01007243001 assembled CDS                                       287   2e-78

>GSVIVT01037715001 assembled CDS
          Length = 545

 Score =  293 bits (749), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 139/151 (92%), Positives = 146/151 (96%)

Query: 1   SFNDKPVNEAAVGPIGKELFEKEQEDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYII 60
           SFNDKPVNEAAVGPIGKELFEKEQE+LLSDLKDIPKKACDRRINEFVKRARAAKIHAYII
Sbjct: 395 SFNDKPVNEAAVGPIGKELFEKEQENLLSDLKDIPKKACDRRINEFVKRARAAKIHAYII 454

Query: 61  SHLKKEMPAMMGKAKTQQRLIDSLADEFGKVQREFHLPPGDFPNVEHFREVLSGYNIDKF 120
           SHLKKEMP MMGKAKTQQRLID+L DEF KVQREFHLP GDFPNV+HFREVLSGY+IDKF
Sbjct: 455 SHLKKEMPTMMGKAKTQQRLIDNLEDEFAKVQREFHLPAGDFPNVDHFREVLSGYSIDKF 514

Query: 121 EKLKPKMIQAVDDMLGYDIPDLLKNFRNPYD 151
           E+LKPKMIQ VDDMLGYDIP+LLK+FRNPYD
Sbjct: 515 ERLKPKMIQTVDDMLGYDIPELLKSFRNPYD 545


>GSVIVT01007243001 assembled CDS
          Length = 575

 Score =  287 bits (734), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/151 (90%), Positives = 145/151 (96%)

Query: 1   SFNDKPVNEAAVGPIGKELFEKEQEDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYII 60
           SFNDKPVNEAAVGPIGK+LFEKEQ+DLL+DL DIPKKACDRRINEFVKRARAAKIHAYII
Sbjct: 425 SFNDKPVNEAAVGPIGKDLFEKEQDDLLADLIDIPKKACDRRINEFVKRARAAKIHAYII 484

Query: 61  SHLKKEMPAMMGKAKTQQRLIDSLADEFGKVQREFHLPPGDFPNVEHFREVLSGYNIDKF 120
           SHLKKEMPAMMGKAK QQRL D+L DEF K+QREFHLP GDFPNVEHFREVL+GY+IDKF
Sbjct: 485 SHLKKEMPAMMGKAKAQQRLTDNLEDEFAKIQREFHLPAGDFPNVEHFREVLNGYSIDKF 544

Query: 121 EKLKPKMIQAVDDMLGYDIPDLLKNFRNPYD 151
           EKLKPKMIQAVDDMLGYDIP+LLKNFRNPY+
Sbjct: 545 EKLKPKMIQAVDDMLGYDIPELLKNFRNPYE 575