Jatropha Genome Database

JcCA0317481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317481.20 - phase: 0 
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037716001 assembled CDS                                       177   8e-46
GSVIVT01037881001 assembled CDS                                        70   2e-13
GSVIVT01019325001 assembled CDS                                        66   4e-12
GSVIVT01036871001 assembled CDS                                        55   5e-09
GSVIVT01037751001 assembled CDS                                        49   6e-07
GSVIVT01003552001 assembled CDS                                        47   2e-06
GSVIVT01003333001 assembled CDS                                        45   5e-06
GSVIVT01003340001 assembled CDS                                        45   5e-06

>GSVIVT01037716001 assembled CDS
          Length = 100

 Score =  177 bits (449), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 93/100 (93%)

Query: 1   MLPQQMKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
           MLPQ++K+AITENPKKLANLIDL NLPSTLREFVGQSQISRLGCFMRVWSYIK NNLQDP
Sbjct: 1   MLPQRVKRAITENPKKLANLIDLANLPSTLREFVGQSQISRLGCFMRVWSYIKANNLQDP 60

Query: 61  KNKNIVNCDEKLKGILLGKPQVDLAELPALIKLHFPKGPK 100
            NKN+V CD+KL+ ILLGKP+V+LAELPALIKLHFPK  K
Sbjct: 61  NNKNVVICDDKLRSILLGKPRVELAELPALIKLHFPKERK 100


>GSVIVT01037881001 assembled CDS
          Length = 68

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%)

Query: 30 LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPA 89
          +++F+G  +I R     ++W+YIK +NLQDP+NK I+ CDEKLK I  GK +V   E+  
Sbjct: 1  MQDFLGVPEIPRTQALKQIWAYIKQHNLQDPENKKIIVCDEKLKSIFAGKDRVGFLEIAG 60

Query: 90 LIKLHFPK 97
          LI  HF K
Sbjct: 61 LINPHFLK 68


>GSVIVT01019325001 assembled CDS
          Length = 128

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%)

Query: 8   KAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVN 67
           +   + P +   +   V +   LR+F+G  + SR     ++W +IK NNLQ+P NK  + 
Sbjct: 37  RTAAKGPPRSGGITKPVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQNPTNKREIL 96

Query: 68  CDEKLKGILLGKPQVDLAELPALIKLHF 95
           CDEKLK +  GK +V   E+  L+  HF
Sbjct: 97  CDEKLKSVFEGKDKVGFLEIGKLLSHHF 124


>GSVIVT01036871001 assembled CDS
          Length = 115

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 35  GQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPALIKLH 94
           G  Q SR     +VW +IK +NLQ+P NK  + CDEKLK I  GK +V   E+  L+  H
Sbjct: 51  GVPQASRSLAIKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFDGKDKVGFLEIAKLLSPH 110

Query: 95  FPK 97
           F K
Sbjct: 111 FVK 113


>GSVIVT01037751001 assembled CDS
          Length = 331

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 3   PQQMKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKN 62
           PQ+  +A T+       L  +  +   L+  VGQ  + R     ++W+YI+ NNLQDP N
Sbjct: 130 PQESARAGTKRRGGPGGLNKVCGVSPELQTIVGQPALPRTEIVKQLWAYIRRNNLQDPSN 189

Query: 63  KNIVNCDEKLKGILLGKPQVDLAELPALIKLH 94
           K  + C+++L+ ++      D+ ++  L+  H
Sbjct: 190 KRKIICNDELR-LVFETDSTDMFKMNKLLAKH 220


>GSVIVT01003552001 assembled CDS
          Length = 303

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 7   KKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIV 66
           KK+  E  K+      L +L   L++F+G  +++R     ++W +I+  +LQDP N+  +
Sbjct: 120 KKSNKEVKKRGGGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNRRNI 179

Query: 67  NCDEKLKGILLGKPQVDLAELPALIKLHF 95
            CDE L+  L G   +++ ++   +  H 
Sbjct: 180 ICDETLRA-LFGVDSINMFQMNKALSKHI 207


>GSVIVT01003333001 assembled CDS
          Length = 347

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 3   PQQMKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKN 62
           P++   A  +       L  +  + + L+  VG+  + R     ++W+YI+ NNLQDP N
Sbjct: 146 PKESAPAAAKRRGGSGGLNKVCGVSTELQAVVGEPTMPRTQIVKQLWAYIRKNNLQDPSN 205

Query: 63  KNIVNCDEKLKGILLGKPQVDLAELPALIKLH 94
           K  + CD+ L+ ++      D+ ++  L+  H
Sbjct: 206 KRKIICDDALR-LVFETDSTDMFKMNKLLAKH 236


>GSVIVT01003340001 assembled CDS
          Length = 344

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 23  LVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQV 82
           +  + + L+  VG+  + R     ++W+YI+ NNLQDP NK  + CD+ L+ ++      
Sbjct: 163 VCGVSTELQAVVGEPTMPRTQIVKQLWAYIRKNNLQDPSNKRKIICDDALR-LVFETDST 221

Query: 83  DLAELPALIKLH 94
           D+ ++  L+  H
Sbjct: 222 DMFKMNKLLAKH 233