Jatropha Genome Database

JcCA0317291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317291.30 + phase: 0 /partial
         (379 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015055001 assembled CDS                                       499   e-142
GSVIVT01016675001 assembled CDS                                        57   2e-08
GSVIVT01000658001 assembled CDS                                        54   8e-08

>GSVIVT01015055001 assembled CDS
          Length = 418

 Score =  499 bits (1285), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/342 (71%), Positives = 276/342 (80%)

Query: 15  NTLQSICYKRGSLHLLDQRKLPLETEYLVIGDASDGWSAIREMVVRGXXXXXXXXXXXXX 74
           ++LQSICYKRGSL LLDQRKLPLET YL I  A DGW AIR+MVVRG             
Sbjct: 52  DSLQSICYKRGSLQLLDQRKLPLETVYLEIKGADDGWHAIRDMVVRGAPAIAIAAALSLA 111

Query: 75  VEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAATKLKEVIXXXXXXXXXXXX 134
           VEV NL+DF GTSDDA SFL  KLDYLV+SRPTAVNLSDA TKLK VI            
Sbjct: 112 VEVSNLEDFIGTSDDAASFLNSKLDYLVTSRPTAVNLSDAVTKLKGVISNAAATAFEAMS 171

Query: 135 VFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLSVLTHCNTGSLATAGYGTA 194
           VFQA++EAAE ML +DVA+N+AIG +GASF+++ +K+ + LS+LTHCNTGSLATAGYGTA
Sbjct: 172 VFQAFLEAAEDMLREDVAANRAIGLYGASFLQSHIKDSKNLSILTHCNTGSLATAGYGTA 231

Query: 195 LGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVS 254
           LGVIRS+H +G+L RAYCTETRPFNQG+RLTAFELVHD IP           LM+ GRV 
Sbjct: 232 LGVIRSVHAEGILLRAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMQAGRVD 291

Query: 255 AVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDLCLSSGNQIVIEERS 314
           AVIVGADRVAANGDTANKIGTYSLAL A HH+IPF+VAAPLTSIDL LSSG +IVIEERS
Sbjct: 292 AVIVGADRVAANGDTANKIGTYSLALSAKHHHIPFFVAAPLTSIDLTLSSGQEIVIEERS 351

Query: 315 PKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
           PKELLN+RGGLGEQVAASGI +WNPAFDVTPA+LI+GIITEK
Sbjct: 352 PKELLNSRGGLGEQVAASGICVWNPAFDVTPADLIAGIITEK 393


>GSVIVT01016675001 assembled CDS
          Length = 579

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 140 IEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLSVLTHCNTGSLATAGYG-TALGVI 198
           IE AE   E    + + I   G  FI       +  ++L H         G+    L V+
Sbjct: 371 IERAERFGEISYKARRIIAMLGQDFI------FDGCTILVH---------GFSRVVLEVL 415

Query: 199 RSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIV 258
           ++   +  L R +CTE RP   G RL+  E+    +P            M +  V  V V
Sbjct: 416 KTAAQNKKLFRVFCTEGRPDRTGLRLSN-EMAKLDVPVKLLIDSAVAYTMDE--VDMVFV 472

Query: 259 GADRVAANGDTANKIGTYSLALCAMHHNIPFYVAA 293
           GAD V  +G   N +GTY +AL A   N P YVAA
Sbjct: 473 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 507


>GSVIVT01000658001 assembled CDS
          Length = 417

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 209 RAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGD 268
           R +  E  P  QG  L A ELV   +            ++   RV+ VIVGA  V ANG 
Sbjct: 236 RVFVAEGAPRYQGHVL-AKELVARGLQTTLITDSAVFAMI--SRVNMVIVGAHAVMANGG 292

Query: 269 TANKIGTYSLALCAMHHNIPFYVAAPLTSIDLCLSSGNQIVIEE-RSPKELLNTRG---- 323
               +G   +AL A  H +PF V A    +        ++++ E +SP ELL+       
Sbjct: 293 VIAPVGLNMVALAAQRHAVPFVVLAGTHKLCPLYPHNPEVLLNELKSPSELLDFGEFSDC 352

Query: 324 -GLGEQVAASGISIWNPAFDVTPANLISGIITE 355
              G    +  + + NPAFD  P  L+S  IT+
Sbjct: 353 MDFGSGNGSPLLHVVNPAFDYVPPKLVSLFITD 385