Jatropha Genome Database

JcCA0317221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.30 + phase: 1 /TE/partial
         (745 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       132   5e-31

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 87/134 (64%)

Query: 544  NAPSTFMRIMNHVLGAFFGKFVVVYFDGILIYSKSLNDHIEHVRIVLQALRSEKLYAKLN 603
            N P+ FM +MN V  A+  +FV+V+ D ILIYS+SL +H +H+   L  LR  +LY KL+
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 604  KCTFCIDRLVFLGFVVSAQGIEVDEEKVKAIKEWPTPKSISEVRSFHGLASFYRRFVKDF 663
            K  F +  + FLG VVS  GI VD  KV+A++EW  P ++ EVRSF GLA +YRRFV+DF
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 664  LFNCSTTNRNNQKG 677
                +   R  +KG
Sbjct: 1092 SRIAAPMTRLTRKG 1105



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 380 VSMLQEFDNVFPTELPSGLPPLRGIEHQIDFIPGSTIPNRPAYRSNPMEIKELQRQVDEL 439
           + M+++F +VFP ELP GLPP R  +  I+  PG+   +   YR  P+E+KEL+ Q+DEL
Sbjct: 581 IPMVRKFQDVFPDELP-GLPPHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDEL 639

Query: 440 MEKGLVRESMSP 451
           + +G +R S SP
Sbjct: 640 LGRGFIRPSTSP 651