Jatropha Genome Database

JcCA0317221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.20 - phase: 0 /partial
         (522 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026776001 assembled CDS                                        96   4e-20

>GSVIVT01026776001 assembled CDS
          Length = 162

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 437 LFTDISMTLNPRDAFFAKKRRVSIRESLGKVCGELICPYPPGIPAMIPGEVITERVLDYL 496
           +++++S  L  R +   +K+RVS+R+SLG++C ELI PYPP I  MIPGE++T+R LDYL
Sbjct: 80  IYSNLSEILGSRLSL-QEKKRVSVRDSLGEICEELIFPYPPRILVMIPGEIVTQRALDYL 138

Query: 497 LDVRSKGVVINGASDPQLSSIVIC 520
           L V+ KG VI+GASD  LSS+++C
Sbjct: 139 LHVKMKGDVISGASDSLLSSMIVC 162



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 174 IAGGMTPSQVEKAIKELEMEGHKPAAVFVTSPTYHGISSNLNEI 217
           + G +    VE AIK+LE EG K A VFVTSPTYHGI SNL+EI
Sbjct: 45  LVGSLLHRYVECAIKDLE-EGRKAATVFVTSPTYHGIYSNLSEI 87