Jatropha Genome Database

JcCA0317221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.10 - phase: 0 /partial
         (505 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026776001 assembled CDS                                        50   2e-06

>GSVIVT01026776001 assembled CDS
          Length = 162

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 216 IAGGITPLQVEKAIKELEMEGHKPAAVFVTSPTYNGICSNLNEI 259
           + G +    VE AIK+LE EG K A VFVTSPTY+GI SNL+EI
Sbjct: 45  LVGSLLHRYVECAIKDLE-EGRKAATVFVTSPTYHGIYSNLSEI 87