Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020129001 assembled CDS                                       223   6e-59

>GSVIVT01020129001 assembled CDS
          Length = 203

 Score =  223 bits (568), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 137/210 (65%), Gaps = 31/210 (14%)

Query: 32  QTTNGGSGSRVLLVFKEKPEGSNLTFDCSPSGACVPCQYSEKTDEKYRCSETGYRIPLKC 91
           ++ N   G RVLL F+E P+GSN TFDCS SG CVPCQYSEK D KYRCSETGYRIPLKC
Sbjct: 21  ESPNDAVGRRVLLSFRETPKGSNATFDCSISGPCVPCQYSEKNDVKYRCSETGYRIPLKC 80

Query: 92  IETKDNIKNGNDKKSQKTRSVIEISNENANPHAMLHDA----ASNEQRSLLDDSSTLEDG 147
           +E +D  K G  +KS  +RS +E S +   PH M ++A    AS   RSLL+DSSTLEDG
Sbjct: 81  VEIEDGSKKGKSQKSPNSRSALENSYKKIKPHVMQNEAEKLYASIRHRSLLEDSSTLEDG 140

Query: 148 SQAYITYRSCIPPVNEEKLSVLGFEAFCEIAVFKNCLTECGYXCLAVNHDAQGIILCLFL 207
            +AYITYRSCIPPVNEEKLSVLGFE F                           ++CL L
Sbjct: 141 LKAYITYRSCIPPVNEEKLSVLGFEGF---------------------------MVCLLL 173

Query: 208 ISGSVVYFRRKQTVTMSGVGGGRIQMNSRF 237
           +SGS VYFRRK++V + G G  RI  +SRF
Sbjct: 174 VSGSAVYFRRKRSVAVPGAGPVRIPTSSRF 203