Jatropha Genome Database

JcCA0317171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.20 + phase: 0 
         (756 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031555001 assembled CDS                                       947   0.0  
GSVIVT01002904001 assembled CDS                                       171   9e-43
GSVIVT01021169001 assembled CDS                                        97   3e-20

>GSVIVT01031555001 assembled CDS
          Length = 605

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/605 (80%), Positives = 501/605 (82%), Gaps = 3/605 (0%)

Query: 155 WEDGLAERA-YDSDGNVKTQVVRSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL 213
           WEDGLAE+  YDS GN+KTQ+VRSPFVQIPLGVTEDRL+GSVDVEESVKTGTTVFQPGLL
Sbjct: 1   WEDGLAEQVEYDSAGNIKTQIVRSPFVQIPLGVTEDRLVGSVDVEESVKTGTTVFQPGLL 60

Query: 214 AEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGA 273
           AEAHRGVLYVDEINLLDEGISNLLLNVL EGVNIVEREGISF+HPCKPLLIATYNPEEGA
Sbjct: 61  AEAHRGVLYVDEINLLDEGISNLLLNVLAEGVNIVEREGISFRHPCKPLLIATYNPEEGA 120

Query: 274 VREHLLDRIAINLSADLPMNFEDRVAAVGIATQFQERSNEVFQMVVEETEFAKTQVILAR 333
           VREHLLDR+AINLSADLPM+FEDRVAAVGIATQFQERSNEVFQMV EETE+AKTQ+ILAR
Sbjct: 121 VREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERSNEVFQMVEEETEYAKTQIILAR 180

Query: 334 EYLKDVTIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 393
           EYLKDV+I R+QLKYLVMEALRGGCQGHRAELYAARVAKCL ALEGREKVNVDDLKKAVE
Sbjct: 181 EYLKDVSISRDQLKYLVMEALRGGCQGHRAELYAARVAKCLTALEGREKVNVDDLKKAVE 240

Query: 394 LVILPRSIVSXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXIPEE 452
           LVILPRSI++                                              IPEE
Sbjct: 241 LVILPRSIINENPPDQQNQQPPPPPPPPQNEDSGEEQNEEENQEDENDKENEQQEQIPEE 300

Query: 453 FIFDAEGGLVDEKLLFFXXXXXXXXXXXXXXXNVIFSEDRGRYIKPMLPKGPVKRLAVDA 512
           FIFDAEGGLVDEKLLFF               NVIFSEDRGRYIKPMLPKGPVKRLAVDA
Sbjct: 301 FIFDAEGGLVDEKLLFFAQQAQRRRGRAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDA 360

Query: 513 TLRAAAPYQKLRREKDTQKSRKVFVEXXXXXXXXXXXXXXXLVIFVVDASGSMALNRMQN 572
           TLRAAAPYQKLRREK+ QK RKVFVE               LVIFVVDASGSMALNRMQN
Sbjct: 361 TLRAAAPYQKLRREKNAQKGRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQN 420

Query: 573 AKGAALKLLAESYTSRDQVAIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG 632
           AKGAALKLLAESYTSRDQVAIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG
Sbjct: 421 AKGAALKLLAESYTSRDQVAIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG 480

Query: 633 LTTAVRVGLNAEKSGDVGRIMIVAITDGRANISLKXXX-XXXXXXXXXXXXXXQELKDEI 691
           LTTAVRVGLNAEKSGDVGR+MIVAITDGRANISLK                  QELKDEI
Sbjct: 481 LTTAVRVGLNAEKSGDVGRVMIVAITDGRANISLKRSTDPEAAAAADAPRPSAQELKDEI 540

Query: 692 LEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKEALS 751
           LEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIAR+AQGKYYYLPNASDAVISATTKEALS
Sbjct: 541 LEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARIAQGKYYYLPNASDAVISATTKEALS 600

Query: 752 ALKSS 756
            LK+S
Sbjct: 601 VLKNS 605


>GSVIVT01002904001 assembled CDS
          Length = 609

 Score =  171 bits (434), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 110/154 (71%), Gaps = 9/154 (5%)

Query: 14  CTPYQLQSSILLPSVKWYSLLPAFYSFKLAKRPHTRRFSVLASSANATLEPGNGAVVAPS 73
           C       S L PS K  SLL    SF    +   RRF V AS   ATLE  NGA+VA  
Sbjct: 10  CYSLSTLHSSLFPSFKSRSLL----SFSSKPKRAQRRFVVQAS---ATLESSNGAIVA-E 61

Query: 74  EKLELSSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 133
           E    +SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISG+RGTAKTVMARGLHAI
Sbjct: 62  ESDNSTSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAI 121

Query: 134 LPPIDVVVGSVANADPSYPEEWED-GLAERAYDS 166
           LPPIDVVVGS+ANADP+ PE+  D G  E A D+
Sbjct: 122 LPPIDVVVGSIANADPTRPEDGGDEGSTEIAEDA 155


>GSVIVT01021169001 assembled CDS
          Length = 335

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 25  LPSVKWYSLLPAFYS-FKLAKRPHTRRFSVLASSANATLEPGNGAVVAPSEKLELSSYGR 83
           LP   W S     Y    +  +    +F V  S+    + P   A     +KL      R
Sbjct: 33  LPLCTWRSHGKKLYGGVGVQLKKGRSQFHVAVSNVATEINPAEKA-----QKLAAEESQR 87

Query: 84  QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIDVVVGS 143
             +P AA+VGQD +K  LLL  ID +IGG+ I G RGT K+   R L  +LP I VV G 
Sbjct: 88  PVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIRVVSGD 147

Query: 144 VANADPSYPEEWEDGLAERAYDSDGNVKTQVV-RSPFVQIPLGVTEDRLIGSVDVEESV 201
             N+DP  PE    G+  R     G + + V+ +   V +PLG TEDR+ G++D+E+++
Sbjct: 148 PFNSDPEDPESM--GMEVRESILKGELLSIVMTKINMVDLPLGATEDRVCGTIDIEKAL 204