Jatropha Genome Database

JcCA0317171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.10 + phase: 0 /pseudo/partial
         (575 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037231001 assembled CDS                                       207   1e-53
GSVIVT01031411001 assembled CDS                                        65   1e-10

>GSVIVT01037231001 assembled CDS
          Length = 1805

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 231/476 (48%), Gaps = 94/476 (19%)

Query: 164  NGKHVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXXXXXXXX 223
            +GK +K ++K G   +++GK   + +   ++K  +    C+ +  K+ KK+         
Sbjct: 1350 DGKPMKINAKIGNVQSQKGK---KGSTDLYKKKGKAYKNCRLLGSKSGKKIFTKEQPVRS 1406

Query: 224  QKNKK---------------VTIVVPLRRSPRKAKYNSLQNXXXXXXXXXXXXXXXXXXX 268
             K +K               V+ VVPLRRS RK K+ + +                    
Sbjct: 1407 CKGRKPSTGKRPVRSLVKREVSTVVPLRRSARKIKFRTPKKPKKETS------------- 1453

Query: 269  XXXXXXTSFRKKRTENYHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSE--SVSLDQHKC 326
                     +K+RT   +SYWLNGL LSR P D+RVM FR ++   PSE  +V +D+  C
Sbjct: 1454 ------WKKKKRRTLVCYSYWLNGLLLSRMPNDDRVMQFRRERLFVPSEHLNVVIDKPTC 1507

Query: 327  PLCHEAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFLRS 386
             LC EAG+T  LNYI+CE+CG+WFHGDAFGL+VE    LIGFRCH C K TPP CP L+ 
Sbjct: 1508 HLCAEAGHTPMLNYINCEICGDWFHGDAFGLDVETIGNLIGFRCHECCKRTPPACPHLQG 1567

Query: 387  HESETAQ---DQNDVGNEFSEQANNIPHLSGINLLEESLGKDEDQRDSFSVDESVHGKEQ 443
               + AQ    ++DVG +       +P  S   + +ES   DED    F VDES+H +EQ
Sbjct: 1568 MSRDEAQLDEVKSDVGIDCL-----VPQ-SEAYVRQES-QSDEDSPGLFVVDESIHKEEQ 1620

Query: 444  FGATLDSD----------------------KTFAPRSRLEVGYQGGLG-----DMKVDID 476
             GA   S+                      KT A  S  +  ++ G+      ++ ++ +
Sbjct: 1621 VGAVPGSNQGPILKPKLEGENGHLLAFEMQKTDATESSDDKDFEAGVPMKTEENLTLEEN 1680

Query: 477  AIQISNDNLNPESISCNEN-HMPKEKTIESRH--------------DSIVTSHDQMQSPS 521
             I++  +N+  E  SC  +  M   +   SRH              +++  S  Q +  S
Sbjct: 1681 TIELGKENVTVEPPSCEADVDMTDTEIASSRHEEATNGLLKSIILDEAVGDSLFQAKLLS 1740

Query: 522  CNVDVNVIETEQASSEHVNATDNL--KTPILKSPIDGVFLESVELHPHSFMATTEL 575
            C  DV+V +TE  SS H  AT+ L   + ILK P+DG  ++S +LH  + +A+ EL
Sbjct: 1741 CKADVDVTDTEMGSSRHEEATNGLLKTSVILKEPVDGTLVDSSKLH-QTILASGEL 1795


>GSVIVT01031411001 assembled CDS
          Length = 1382

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLA-PSESVSLDQHKCPLCHEAGYTSTLNYISCEMCGEWF 350
            GL   +K  ++  + FR K  L   +   +  +  C LCH+  Y S L YI CE C  W+
Sbjct: 1047 GLIWKKKNVEDSGIDFRLKNILLRGNPDTNWSRPVCHLCHQP-YNSDLMYICCETCKNWY 1105

Query: 351  HGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFL 384
            H +A  L   K   ++GF+C  CR+   PVCP++
Sbjct: 1106 HAEAVELEESKILEVVGFKCCKCRRIRSPVCPYM 1139