Jatropha Genome Database

JcCA0317161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317161.20 - phase: 0 
         (459 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017045001 assembled CDS                                       671   0.0  

>GSVIVT01017045001 assembled CDS
          Length = 428

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/441 (73%), Positives = 360/441 (81%), Gaps = 14/441 (3%)

Query: 20  MLERVLSSRRASPHPDDAVSDNDTLPLSGDESKTKKQ-SLSLLAANYLSRLSHXXXXXXX 78
           MLER+LS+RR   H D+   ++D       ESKT+K  S ++  + YL+RL +       
Sbjct: 1   MLERMLSARRPPLHSDEGEVEDD-------ESKTRKHISFAIRVSTYLTRLGYLLPCLLL 53

Query: 79  XXXXXXXXXXXXXXXXXFHSRNFVCVSPFDPAIRVGFFGLDGLESDFGVLGVPCCRSKHG 138
                              SR   C    D A R  FFG DG +SDFG LGVP CRSKHG
Sbjct: 54  GVVLSCIILVSTW------SRRLACAPSSDAASRFSFFGFDGPDSDFGSLGVPWCRSKHG 107

Query: 139 KKVEWTAKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLWFIARWLKPDLMIESGAFK 198
           K V+WT+KDLLKGLEEFVPIYE RPIKNNMYGMGFDHSFGLWF+A+WLKPDLMIESGAFK
Sbjct: 108 KTVQWTSKDLLKGLEEFVPIYEMRPIKNNMYGMGFDHSFGLWFMAQWLKPDLMIESGAFK 167

Query: 199 GHSTWVLRQAMPDMPIISLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVEWKSVMK 258
           GHSTW+LRQAMPD  I+SLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSV+W+SVMK
Sbjct: 168 GHSTWILRQAMPDTRIVSLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVDWRSVMK 227

Query: 259 KHGITDLSRVLIFFDDHQNELKRVRQALSAGFRHLVFEDNYDTGTGDHYSLRQICDQSYI 318
           +HGITDLSRVLIFFDDHQNELKR++QAL AGF+HL+FEDNYDTGTGDHYSLRQICDQ YI
Sbjct: 228 QHGITDLSRVLIFFDDHQNELKRIKQALKAGFQHLIFEDNYDTGTGDHYSLRQICDQFYI 287

Query: 319 RGGGHSCFRDSDESRIRSKRKKFWEKAVDVDELCGPNEAWWGVRGWMRDNFNHSNKPISY 378
           RGGGHSCFRDSDE+R R+KRKKFWEKAVD DELCG  E WWGVRG MRDNFNHSNK ISY
Sbjct: 288 RGGGHSCFRDSDEARERAKRKKFWEKAVDTDELCGAGEEWWGVRGQMRDNFNHSNKDISY 347

Query: 379 LEHFQNSRFIESILDVYWELPPVAGPSLTHQTRYDPARTTPPIVEDGRYGLFQRIGLGRL 438
            EHF NSRF+ES+LDVYWELPPVAGPSLTHQ+RYDPAR + PIVEDGR+GLF+R+GLGRL
Sbjct: 348 TEHFMNSRFVESVLDVYWELPPVAGPSLTHQSRYDPARVSSPIVEDGRFGLFRRLGLGRL 407

Query: 439 ENSVFNGYTQMVYLQISEQES 459
           E  VFNGYTQMVYLQISEQES
Sbjct: 408 EPFVFNGYTQMVYLQISEQES 428