Jatropha Genome Database

JcCA0317081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.30 - phase: 0 
         (335 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001192001 assembled CDS                                       560   e-160
GSVIVT01018019001 assembled CDS                                       522   e-149
GSVIVT01011899001 assembled CDS                                       380   e-106

>GSVIVT01001192001 assembled CDS
          Length = 328

 Score =  560 bits (1442), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/333 (81%), Positives = 294/333 (88%), Gaps = 17/333 (5%)

Query: 1   MRHSGAEQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTV 60
           M H   + SS ISDFL Q+GGVAVIDGGLATELE+HGADLNDPLWSAKCLL+SPHLIRTV
Sbjct: 1   MGHVDLQPSSFISDFLLQTGGVAVIDGGLATELERHGADLNDPLWSAKCLLSSPHLIRTV 60

Query: 61  HLDYLEAGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGA 120
           HLDYLEAGAD+IITASYQATIQGFEA+GFS  E EALL+KSVEIACEAR +         
Sbjct: 61  HLDYLEAGADIIITASYQATIQGFEARGFSRGESEALLRKSVEIACEARKM--------- 111

Query: 121 CDGNNDNRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLAD 180
                   +LK RPILVAASVGSYGAYLADGSEYSGIYGD+IT+ETLKDFHRRRVQ+LAD
Sbjct: 112 --------ILKHRPILVAASVGSYGAYLADGSEYSGIYGDEITVETLKDFHRRRVQILAD 163

Query: 181 SGADLIAFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAES 240
           +GADLIAFETVPNK+EAQAYA+LLEEENIKIPAWFSFNSKDG++VVSGDSLLEC SIAES
Sbjct: 164 AGADLIAFETVPNKLEAQAYAELLEEENIKIPAWFSFNSKDGVHVVSGDSLLECVSIAES 223

Query: 241 CSKVAAVGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDF 300
           C KV +VGINCTPPRFIHGLIL IKKVT+KPILIYPNSGESYD + KEWVQ TG+S EDF
Sbjct: 224 CKKVVSVGINCTPPRFIHGLILSIKKVTTKPILIYPNSGESYDPEQKEWVQKTGVSVEDF 283

Query: 301 VSYVNKWCEIGASLIGGCCRTTPKTIRAIYWTL 333
           VSYVNKWCE+GASL+GGCCRTTP TIRAIY TL
Sbjct: 284 VSYVNKWCEVGASLVGGCCRTTPNTIRAIYRTL 316


>GSVIVT01018019001 assembled CDS
          Length = 330

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/324 (77%), Positives = 283/324 (87%), Gaps = 8/324 (2%)

Query: 10  SLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYLEAGA 69
           + ++DF+RQSGG AVIDGGLATELE+HGADLNDPLWSA CL+ SP LIR VHLDYLEAGA
Sbjct: 10  TFMADFIRQSGGYAVIDGGLATELERHGADLNDPLWSATCLIHSPDLIRRVHLDYLEAGA 69

Query: 70  DVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNNDNRV 129
            +IITASYQATIQGFEAKG S +E E LL++SVEIACEARDIY+ERC  G C        
Sbjct: 70  SIIITASYQATIQGFEAKGLSREEAEVLLRRSVEIACEARDIYHERCAKGTC-------- 121

Query: 130 LKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADLIAFE 189
           L+QRPILVAASVGSYGAYLADGSEYSG YG  +TLETLKDFHRRRVQVLA+SGADLIAFE
Sbjct: 122 LEQRPILVAASVGSYGAYLADGSEYSGHYGAAVTLETLKDFHRRRVQVLAESGADLIAFE 181

Query: 190 TVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVAAVGI 249
           T+PNK+EA+AYA+LL+EENIKIPAWFSF S DGINVVSGDSL+ECASIA+SC +V AVGI
Sbjct: 182 TIPNKLEAKAYAELLDEENIKIPAWFSFTSLDGINVVSGDSLIECASIADSCKQVVAVGI 241

Query: 250 NCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVNKWCE 309
           NCTPPRFIHGLIL I+KVT+KP++IYPNSGE+YD   KEWV+++G+ D DFVSYV+KW E
Sbjct: 242 NCTPPRFIHGLILLIQKVTTKPVVIYPNSGETYDGVRKEWVKSSGVQDGDFVSYVSKWRE 301

Query: 310 IGASLIGGCCRTTPKTIRAIYWTL 333
            GASL GGCCRT+P TIRAI  TL
Sbjct: 302 AGASLFGGCCRTSPHTIRAISMTL 325


>GSVIVT01011899001 assembled CDS
          Length = 325

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 236/329 (71%), Gaps = 8/329 (2%)

Query: 6   AEQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYL 65
            + SSL+ D + ++GG AV+DGG AT+LE HGA +NDPLWSA CL+  P LI+ VHL+YL
Sbjct: 2   GKTSSLLEDLIEKAGGCAVVDGGFATQLEIHGATINDPLWSALCLIKDPDLIKRVHLEYL 61

Query: 66  EAGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNN 125
           EAGAD+++T+SYQATI GF +KG S +EGE LL++SV +A EARD +++   T    G+ 
Sbjct: 62  EAGADILVTSSYQATIPGFLSKGLSIEEGELLLERSVRLAVEARDKFWD--VTKRVPGHG 119

Query: 126 DNRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADL 185
            NR L      VAAS+GSYGAYLADGSEYSG YG D+ L+ LKDFHRRR+QVL  S  DL
Sbjct: 120 YNRAL------VAASIGSYGAYLADGSEYSGCYGPDMNLDKLKDFHRRRLQVLVRSCPDL 173

Query: 186 IAFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVA 245
           +AFET+PNK+EAQA  +LLEEEN++IP+W  F+S DG N  SG+S  EC  I     KV 
Sbjct: 174 LAFETIPNKLEAQACVELLEEENVQIPSWICFSSVDGENAPSGESFKECLDIINKSKKVN 233

Query: 246 AVGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVN 305
           AVGINC PP F+  LI   K++T KPI++YPNSGE +D   K W+ +    D+ F  Y  
Sbjct: 234 AVGINCAPPHFLESLICKFKELTEKPIVVYPNSGEVWDGRAKRWLPSKCFGDDKFELYAT 293

Query: 306 KWCEIGASLIGGCCRTTPKTIRAIYWTLR 334
           KW ++GA LIGGCCRTTP TIRAI   L+
Sbjct: 294 KWRDLGAKLIGGCCRTTPSTIRAISKVLK 322