Jatropha Genome Database

JcCA0317081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.20 + phase: 0 
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001191001 assembled CDS                                       191   1e-49

>GSVIVT01001191001 assembled CDS
          Length = 169

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/148 (64%), Positives = 118/148 (79%)

Query: 32  TKGRDVSKSNKGHQSKEKKSEGKYGRRKSGAVDFDVLKQHGYKGGMSVLSVPLPKEDTKP 91
           T+  D S S K   +    ++ K G++K+GA+DF+ LK+HGYKGG+SVLSVP PKED K 
Sbjct: 22  TEAGDGSSSKKPKNNSTAVAQVKSGKQKNGAIDFEALKRHGYKGGLSVLSVPPPKEDEKR 81

Query: 92  DWAWSTGKERREIEAVEESYEQRQKTRAALLDAERLTNVQTSKEKKNLSFSQKEKRKRDL 151
           DW+WSTGK+R   + VEESY++RQKTR A+ D E+L NVQ+  EKKNLSFSQKEKRKRD 
Sbjct: 82  DWSWSTGKDRATTKEVEESYDERQKTRYAIADGEQLMNVQSRNEKKNLSFSQKEKRKRDF 141

Query: 152 GQASRGKNFVEEEKRLSRESGIYSGFDT 179
           GQASRGKN+VEEEKRL R+SGIYSGFD+
Sbjct: 142 GQASRGKNYVEEEKRLLRDSGIYSGFDS 169