Jatropha Genome Database

JcCA0317081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.10 - phase: 0 
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001190001 assembled CDS                                       408   e-114
GSVIVT01020385001 assembled CDS                                        84   7e-17
GSVIVT01017585001 assembled CDS                                        70   8e-13

>GSVIVT01001190001 assembled CDS
          Length = 267

 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/226 (85%), Positives = 214/226 (94%)

Query: 1   MEINSDVKDGSLILIKQGAEARVYESTFVGRQSIVKERFSKKYRHPSLDSKLTLKRLNAE 60
           MEI +D K+ SLIL+KQGAEARV+ES FVGR+ +VKERFSKKYRHPSLDSKLTLKRLNAE
Sbjct: 42  MEIKADGKESSLILLKQGAEARVFESNFVGRRCVVKERFSKKYRHPSLDSKLTLKRLNAE 101

Query: 61  ARCMTKARRLGVSTPVLYALDPLLHTLTFEYVDGHSVKDIFLEFGLHGVVEERLADIAMQ 120
           ARCMT+ARRLGV+TPVLY++DP+L TLTFEYV+G +VKD+FL+FGLHGV EER+ DIA Q
Sbjct: 102 ARCMTRARRLGVATPVLYSVDPVLQTLTFEYVEGPAVKDVFLDFGLHGVAEERMDDIAKQ 161

Query: 121 IGDAIGKLHDGGLIHGDLTTSNMLIRNGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERAL 180
           IGDAIGKLHDG LIHGDLTTSNMLI++GTNQLVLIDFGLSFTSTL EDKAVDLYVLERAL
Sbjct: 162 IGDAIGKLHDGNLIHGDLTTSNMLIQSGTNQLVLIDFGLSFTSTLHEDKAVDLYVLERAL 221

Query: 181 LSMHSSCGNVMDRIIAAYKKSSKQWSSTMNKLAQVRQRGRKRTMVG 226
           LSMHSSCGNVMDRI+AAY+KSSKQWSST+NKLAQVRQRGRKRTMVG
Sbjct: 222 LSMHSSCGNVMDRILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG 267


>GSVIVT01020385001 assembled CDS
          Length = 91

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 23/114 (20%)

Query: 77  LYALDPLLHTLTFEYVDGHSVKDIFLEFGLHGVVEERLADIAMQIGDAIGKLHDGGLIHG 136
           +Y +DP L  L+FEY++  +VKDIFL+FGLH +++                       +G
Sbjct: 1   MYTVDPKLQALSFEYMEDLAVKDIFLDFGLHILLK-----------------------NG 37

Query: 137 DLTTSNMLIRNGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNV 190
                +MLI++G  QLV IDFGLSF S  P DKA  LYV E  LL +HSS  NV
Sbjct: 38  CTIVQSMLIQSGAYQLVFIDFGLSFMSIFPVDKADALYVHEWPLLLVHSSYENV 91


>GSVIVT01017585001 assembled CDS
          Length = 76

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 40/64 (62%)

Query: 127 KLHDGGLIHGDLTTSNMLIRNGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSS 186
            LHD GLI  D  TS MLI++G  QL  IDF LSF S  P DK   LYVLE  LL +HSS
Sbjct: 13  SLHDCGLILDDFPTSRMLIQSGAYQLFFIDFELSFMSIFPVDKVDVLYVLEWPLLLVHSS 72

Query: 187 CGNV 190
             NV
Sbjct: 73  YENV 76