Jatropha Genome Database

JcCA0317001.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.30 + phase: 0 
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007224001 assembled CDS                                       340   4e-94
GSVIVT01013248001 assembled CDS                                        52   3e-07
GSVIVT01024244001 assembled CDS                                        51   4e-07

>GSVIVT01007224001 assembled CDS
          Length = 236

 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 167/233 (71%), Positives = 191/233 (81%), Gaps = 6/233 (2%)

Query: 1   MQGKDGDE-----EPSDRHMSTISRHAFGDDEEQ-PAFSISIIENMKEEYGLFVWPCSVI 54
           M+G D DE       SD+HM+T SRH FG+  +   AFSI+IIE+MKE+YGLFVWPCSV+
Sbjct: 1   MEGSDEDEPAGASSQSDQHMTTTSRHHFGNARDSGDAFSITIIESMKEDYGLFVWPCSVV 60

Query: 55  LAEYVWQQRDRFSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNRLEVLDNIRKVCNLN 114
           LAEYVWQQR RF GA VVELGAGTSLPGL AAKLGSDVTLTD++ RLEVLDN+R+VC+LN
Sbjct: 61  LAEYVWQQRSRFLGASVVELGAGTSLPGLVAAKLGSDVTLTDNAVRLEVLDNMRRVCDLN 120

Query: 115 KLKCNVLGLTWGIWDEAIFSLKPTIILGADVLYEASXXXXXXXXXXXXXQNSPGSVLITT 174
           +LKC VLGLTWG+WD A+F+LKP IILGADVLY+ +             QN+ GSV ITT
Sbjct: 121 ELKCEVLGLTWGMWDAAVFNLKPKIILGADVLYDTNAFDDLFATVTFLLQNTLGSVFITT 180

Query: 175 YHNRSGHHLIEFLMVKWGLKCVKLLDGFSFMPSYKASGLNGNIQLAEIVLNSK 227
           YHNRSGHHLIEFLMVKWGLKCVKLLDGFSFMPS KASGL+G+IQLAEIVLN +
Sbjct: 181 YHNRSGHHLIEFLMVKWGLKCVKLLDGFSFMPSDKASGLSGSIQLAEIVLNCE 233


>GSVIVT01013248001 assembled CDS
          Length = 132

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 45  GLFVWPCSVILAEYVWQQRDRFSGARVVELGAGTSLPGLTAAKLGSD-VTLTDDSNRLEV 103
           G ++W  S++L++++  + +   G  V+ELGAGT LPGLTAA LG+  V LTD    L  
Sbjct: 32  GSWLWDSSLLLSQWMATRAEDIRGKSVIELGAGTGLPGLTAAMLGAGRVVLTDVEALLRG 91

Query: 104 LDNIRKVCNLNKLKCNVLGLTWG 126
           L+   +V  L + +  V  L WG
Sbjct: 92  LERNVEVNGLGE-RVEVRELVWG 113


>GSVIVT01024244001 assembled CDS
          Length = 268

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 45  GLFVWPCSVILAEYVWQQRDR----FSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNR 100
           G  +W   V+L +++    D       G +VVELG+G  L G  AA LG+ V LTD  +R
Sbjct: 81  GSVMWDSGVVLGKFLEHAVDSGLLLLQGKKVVELGSGCGLVGCIAALLGAQVFLTDLPDR 140

Query: 101 LEVL-DNIRKVCNLNKLK--CNVLGLTWGIWDEA-IFSLKPTIILGADVLY 147
           L +L  N+        L+    V  LTWG   E  +    P  +LG+DV+Y
Sbjct: 141 LRLLKKNVETNLKQGDLRGSATVHELTWGDDPEPELIEPLPDYVLGSDVIY 191