Jatropha Genome Database

JcCA0317001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.20 - phase: 0 
         (215 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007223001 assembled CDS                                       273   6e-74

>GSVIVT01007223001 assembled CDS
          Length = 211

 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 150/167 (89%), Gaps = 1/167 (0%)

Query: 50  KAQKLSFFPKLQRIGHKAKAMPQESEVSLAADAFTHFKHLLLPITDRNPYLSEGTRQXXX 109
           K  KLS FP L ++GH+AK+ PQ+SEV+LAA+AFT FKHLLLP+TDRNPYLSEGTRQ   
Sbjct: 45  KTSKLSIFPGLLKLGHRAKSKPQDSEVNLAAEAFTSFKHLLLPVTDRNPYLSEGTRQAAA 104

Query: 110 XXXXXXKKYGADITVVVIDEKERESLPEHETQMSSIRWHLSEGGFQEFKLLERLGEG-NK 168
                 KKYGADITVVVIDEK++ES+PEH+TQ+SSIRWHLSEGGFQEF++LERLGEG +K
Sbjct: 105 TTAALAKKYGADITVVVIDEKQKESIPEHDTQLSSIRWHLSEGGFQEFRVLERLGEGSSK 164

Query: 169 PTAIIGDVADELNLDLVVISMEAIHSKHVDANLLAEFIPCPVLLLPL 215
           PTAIIG+VAD+LNLDLVV+SMEAIHSKHVDANLLAEFIPCPVLLLPL
Sbjct: 165 PTAIIGEVADDLNLDLVVLSMEAIHSKHVDANLLAEFIPCPVLLLPL 211