Jatropha Genome Database
- JcCA0317001.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317001.10 + phase: 0 /partial
(89 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01024010001 assembled CDS 141 7e-35
GSVIVT01025188001 assembled CDS 136 2e-33
GSVIVT01016276001 assembled CDS 134 9e-33
GSVIVT01025681001 assembled CDS 130 9e-32
GSVIVT01032861001 assembled CDS 119 4e-28
GSVIVT01026942001 assembled CDS 115 4e-27
GSVIVT01026944001 assembled CDS 114 1e-26
GSVIVT01019743001 assembled CDS 112 5e-26
GSVIVT01006527001 assembled CDS 55 9e-09
GSVIVT01023078001 assembled CDS 52 5e-08
GSVIVT01018189001 assembled CDS 49 4e-07
GSVIVT01035640001 assembled CDS 49 5e-07
GSVIVT01033677001 assembled CDS 48 9e-07
GSVIVT01024235001 assembled CDS 46 4e-06
GSVIVT01016615001 assembled CDS 45 6e-06
>GSVIVT01024010001 assembled CDS
Length = 198
Score = 141 bits (355), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 71/86 (82%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V VLAPLPIGF VF+VH+AT+PITGTGINPARSFGAAVIYN + VWDD WIFWVGP VG
Sbjct: 111 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKVWDDQWIFWVGPFVGA 170
Query: 62 XXXXXYHQIVLRAGAVKALGSFRGNP 87
YHQ +LRA A+KALGSFR NP
Sbjct: 171 LAAAAYHQYILRAAAIKALGSFRSNP 196
>GSVIVT01025188001 assembled CDS
Length = 196
Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 69/85 (81%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V VLAPLPIGF VF+VH+AT+PITGTGINPARSFGAAVIYN WDDHW+FWVGP +G
Sbjct: 111 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWMFWVGPFIGA 170
Query: 62 XXXXXYHQIVLRAGAVKALGSFRGN 86
YHQ +LRA A+KALGSFR N
Sbjct: 171 AIAAFYHQYILRAAAIKALGSFRSN 195
>GSVIVT01016276001 assembled CDS
Length = 198
Score = 134 bits (337), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 68/83 (81%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V VLAPLPIGF VF+VH+AT+PITGTGINPARS GAAVIYN + WDD WIFWVGP +G
Sbjct: 111 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNEKAWDDQWIFWVGPFIGA 170
Query: 62 XXXXXYHQIVLRAGAVKALGSFR 84
YHQ +LRAGAVKALGSFR
Sbjct: 171 AIAAFYHQFILRAGAVKALGSFR 193
>GSVIVT01025681001 assembled CDS
Length = 163
Score = 130 bits (328), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 69/88 (78%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V VLAPLPIGF VF+VH+AT+PITGTGINPARS GAAVIYN+ W DHW+FW GP +G
Sbjct: 76 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQPKAWSDHWVFWAGPFIGA 135
Query: 62 XXXXXYHQIVLRAGAVKALGSFRGNPVM 89
YHQ +LRAGAVKALGSF+ + M
Sbjct: 136 AIAAFYHQFILRAGAVKALGSFKSSSHM 163
>GSVIVT01032861001 assembled CDS
Length = 213
Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V +LAPLPIGF VF+VH+AT+PITGTGINPARS GAA+IYNK WDDHWIFWVGP +G
Sbjct: 135 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGA 194
Query: 62 XXXXXYHQIVLRA 74
YHQ+V+RA
Sbjct: 195 ALAALYHQVVIRA 207
>GSVIVT01026942001 assembled CDS
Length = 190
Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V +LAPLPIGF VF+VH+AT+PITGTGINPARS GAA+IYN++ WDD WIFWVGP +G
Sbjct: 111 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNREHAWDDMWIFWVGPFIGA 170
Query: 62 XXXXXYHQIVLRA 74
YHQIV+RA
Sbjct: 171 ALAALYHQIVIRA 183
>GSVIVT01026944001 assembled CDS
Length = 190
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V +LAPLPIGF VF+VH+AT+PITGTGINPARS GAA+IYN+ WDD WIFWVGP +G
Sbjct: 111 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGNAWDDMWIFWVGPFIGA 170
Query: 62 XXXXXYHQIVLRA 74
YHQIV+RA
Sbjct: 171 TLATLYHQIVIRA 183
>GSVIVT01019743001 assembled CDS
Length = 215
Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVGX 61
V +LAPLPIGF VF+VH+AT+PITGTGINPARS GAA+I+N++ WDD WIFWVGP +G
Sbjct: 136 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNREHAWDDMWIFWVGPFIGA 195
Query: 62 XXXXXYHQIVLRA 74
Y QIV+RA
Sbjct: 196 ALAAMYQQIVIRA 208
>GSVIVT01006527001 assembled CDS
Length = 124
Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 4 VLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVG 60
++AP+ IGF V +A P +G +NPARSFG AV+ + ++WI+WVGPLVG
Sbjct: 45 IIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSENWIYWVGPLVG 98
>GSVIVT01023078001 assembled CDS
Length = 429
Score = 52.0 bits (123), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 30/44 (68%)
Query: 2 VQVLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKM 45
V LAPL I F V +VH AT+PITGTGINPARS G ++M
Sbjct: 369 VSNLAPLSIEFAVLLVHPATIPITGTGINPARSLGPPSSTTREM 412
>GSVIVT01018189001 assembled CDS
Length = 251
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 4 VLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVG 60
++ P+ +GF + T P+TG +NPARSFG A + W++WVGPLVG
Sbjct: 171 IMGPIAVGFIYGANILVTAPLTGGSMNPARSFGPAFVTGD---MKKQWVYWVGPLVG 224
>GSVIVT01035640001 assembled CDS
Length = 253
Score = 48.5 bits (114), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 5 LAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVG 60
L P+ G V MA +G +NPARSFG A++ W +HW++WVGPLVG
Sbjct: 170 LGPMITGLVVGANVMAGGAFSGASMNPARSFGPALV---SWDWTNHWVYWVGPLVG 222
>GSVIVT01033677001 assembled CDS
Length = 213
Score = 47.8 bits (112), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 4 VLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVG 60
++AP+ IGF V +A G +NPA SFG A++ W +HW++W GPL+G
Sbjct: 135 IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWTWTNHWVYWAGPLIG 188
>GSVIVT01024235001 assembled CDS
Length = 259
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 4 VLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPLVG 60
V+APL IGF V + G +NPAR+FG A++ + W W++WVGPLVG
Sbjct: 174 VIAPLAIGFIVGANILVGGAFDGASMNPARAFGPALVGWR---WRYQWVYWVGPLVG 227
>GSVIVT01016615001 assembled CDS
Length = 251
Score = 45.1 bits (105), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 4 VLAPLPIGFTVFVVHMATLPITGTGINPARSFGAAVIYNKKMVWDDHWIFWVGPL 58
++AP+ IGF V +A G +NPA SFG AV+ W +HW++W GPL
Sbjct: 173 IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWSWANHWVYWAGPL 224