Jatropha Genome Database

JcCA0316871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316871.30 - phase: 0 
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014564001 assembled CDS                                       225   4e-60
GSVIVT01035352001 assembled CDS                                       224   6e-60
GSVIVT01016886001 assembled CDS                                       209   2e-55

>GSVIVT01014564001 assembled CDS
          Length = 122

 Score =  225 bits (573), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 113/121 (93%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKA QAS+FV KHG AY+KQLLEQNKQY+QEP TVEKCNLL+KQLFYTRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVVKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP RYESFWKELDYVK++WKNRQELKVEDAGIAALFGLEC+ WFCAGEIVGRGFT TGY
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTGY 120

Query: 121 Y 121
           Y
Sbjct: 121 Y 121


>GSVIVT01035352001 assembled CDS
          Length = 122

 Score =  224 bits (572), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 112/121 (92%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKA QAS+FVAKHG AYYKQL+EQNKQYIQEP TVEKCNLLSKQLFYTRLA
Sbjct: 1   MASKLVQLQSKASQASQFVAKHGCAYYKQLMEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP RYE+FWKELD VK LWKNRQE+KVEDAGIAALFGLECF WFCAGEIVGRGFT TGY
Sbjct: 61  SIPGRYEAFWKELDCVKQLWKNRQEMKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 Y 121
           Y
Sbjct: 121 Y 121


>GSVIVT01016886001 assembled CDS
          Length = 122

 Score =  209 bits (533), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/121 (79%), Positives = 110/121 (90%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL QLQ+KAC+AS+ VAKH  +YYK+LLE+NKQYIQ+P T++KC+LL+KQLF TRLA
Sbjct: 1   MASKLVQLQTKACKASQLVAKHANSYYKELLEENKQYIQDPPTIQKCDLLAKQLFATRLA 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP RYE+FWKEL Y+KNLWKNRQELKVEDAGIAALFGLEC+ WFC GEIVGRGFT TGY
Sbjct: 61  SIPGRYEAFWKELGYIKNLWKNRQELKVEDAGIAALFGLECYAWFCGGEIVGRGFTFTGY 120

Query: 121 Y 121
           Y
Sbjct: 121 Y 121