Jatropha Genome Database

JcCA0316871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316871.20 - phase: 0 
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015240001 assembled CDS                                       192   6e-50
GSVIVT01010913001 assembled CDS                                        69   9e-13

>GSVIVT01015240001 assembled CDS
          Length = 151

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 99/117 (84%)

Query: 69  NNDSQVKCSKTCVAENCNSVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKKGL 128
           +N+SQ+KCSK CVAENCNSVGIRYGK+CGVGWTGCPGEKPCDDLDACCKIHDECVEKKGL
Sbjct: 35  SNNSQIKCSKACVAENCNSVGIRYGKFCGVGWTGCPGEKPCDDLDACCKIHDECVEKKGL 94

Query: 129 MSIKCHEXXXXXXXXXXXXXXIGFSRDCTYETAVPTMLQGMDMAILLSQLGSPRDEL 185
           +SIKCHE              +GFSR+C +ETAVPTM+QGMDMAILLSQLGS + EL
Sbjct: 95  ISIKCHEKFKTCIKRVQKSGKVGFSRECPFETAVPTMVQGMDMAILLSQLGSSKLEL 151


>GSVIVT01010913001 assembled CDS
          Length = 148

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 75  KCSKTCVAENCN-SVGIRYGKYCGVGWTGCPGEKPCDDLDACCKIHDECVEKK 126
           +CS+ C +E C+    +RYGKYCG+ ++GCPGEKPCD LDACC  HD CV+ K
Sbjct: 37  ECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGEKPCDGLDACCMKHDACVQAK 89