Jatropha Genome Database

JcCA0316711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316711.10 + phase: 0 /partial
         (550 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011100001 assembled CDS                                       387   e-107
GSVIVT01012049001 assembled CDS                                       110   2e-24

>GSVIVT01011100001 assembled CDS
          Length = 1459

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 254/575 (44%), Positives = 330/575 (57%), Gaps = 69/575 (12%)

Query: 21  QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVYFFGTQQIAFC--NPADVEAF 78
           +WKVGDLVLAKVKGFPAWPATVSEPEKWGYSADW+KVLVYFFGT+Q+  C   P ++   
Sbjct: 22  KWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWRKVLVYFFGTKQMERCEAGPLNLLGH 81

Query: 79  TEEKKQSLLVKRQGKGADFVRAVQEIIDSYEKSKKTN----------------------- 115
            E+ K+   ++   +  DF+  +  +  S +  ++ +                       
Sbjct: 82  REQWKKHFFLRSHARQWDFIIVISWVFKSKQVLRRYDEYLHQILDVASNLGIDPMTKEFA 141

Query: 116 -----------QADDLNSGEEVTLANGGNSME-------SSADFESKGRTETSEATVTGR 157
                      QA  L   E   L     SM        +S       R +TS  +   R
Sbjct: 142 GVPLSLISLDWQAACLYQQELFGLYLIVLSMHKLLVRYFNSPTVAVNSRLKTS-YSAEDR 200

Query: 158 NDPSLGSSVAPDVSKIGSLLDKEALLEQPTDNVVVTAKPVITTYTSRKRSGGLRTRKRAT 217
           ++P+L    A  V++I  L D EAL ++P DN+VV+  P + TY+SR+R GG+R +   T
Sbjct: 201 SEPNLPIENAAAVTQIDGLHDGEALSQEPNDNMVVSETPTLATYSSRRRLGGMRLQTCTT 260

Query: 218 EKQDXXXXXXXXXXXXXXXXXQNLMIPSKLDGDMNVGDASTEVILDRSLRRNKRVRKSPD 277
           +++                  QNL++PS  DG  N  D +T    + SLRRNKR+RKSP+
Sbjct: 261 QRRTSSARISRSLSRVDSCRFQNLIMPSN-DGGKNSEDVATNGTRNGSLRRNKRIRKSPE 319

Query: 278 ASEWDDVDSSAHVSNGSIEDNSSEIVTVDSDSLSLNEGSTIDSESKPEHSETVVECLEGD 337
           ASEW DVDS   V NGS+EDN SEIVT +SD+LS NEGSTI+S  +PEHSE+ VE LEGD
Sbjct: 320 ASEWLDVDSPNFVLNGSVEDNGSEIVTAESDTLSFNEGSTIESGCRPEHSES-VEGLEGD 378

Query: 338 VELSKGLDFQIKAVVIKKKRKPNRKRVTNEAAEQHVRLETEADLDAGVHSSSQNSQS-CE 396
           +ELSK  D Q KAVV KKKRKPNRKRVTN+  +  VR +  A L+  V  S  NS++ CE
Sbjct: 379 IELSKRFDLQTKAVVTKKKRKPNRKRVTNDTPDS-VRQDNGAGLEVSVQRSGLNSENVCE 437

Query: 397 NLNERHNKEDGDEHLPLVKRARVRMGKLXXXXXXXXXXXXXXXKISHGVAPSEVHNGLCP 456
             NER +KEDGDEHLPLVKRARVRMGK                         E  + L  
Sbjct: 438 ISNERFSKEDGDEHLPLVKRARVRMGKPSSTV--------------------EALDNLVR 477

Query: 457 VEERSPNEVAVAMVEQIGPPTNFNDDCSADKGLFSVKGAVDNA-STQKVFVQIPANRSQL 515
           +EE+SP EV + ++EQ+  P+N +D     +    VKG +DN+  +    +Q+  + + L
Sbjct: 478 IEEKSPMEVPLNLLEQVCTPSNCDDYDVISRTSPVVKGCLDNSLLSNDDDIQLAEDDTHL 537

Query: 516 SIVKENQSFGCSADGEAALPPSKRLHRALEAMSAN 550
             VK+NQ  G S DGEAALPPSKRLHRALEAMSAN
Sbjct: 538 LTVKKNQPLGRSVDGEAALPPSKRLHRALEAMSAN 572


>GSVIVT01012049001 assembled CDS
          Length = 1240

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 21  QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVYFFGTQQIAFCNPADVEAFTE 80
           + ++GDLVLAKVKGFPAWPA + +PE W  + D KK  V FFGT++IAF  P D+EAFT 
Sbjct: 17  ELRLGDLVLAKVKGFPAWPAKIGKPEDWDRTPDPKKYFVQFFGTEEIAFVAPGDIEAFTS 76

Query: 81  EKKQSLLVKRQGKGADFV-RAVQEIIDSYEKSKKTNQADDLN 121
           E K  L  + +GK   F  +AV+EI D+YE+ ++ N +   N
Sbjct: 77  EVKNKLSARCRGKTVKFFAQAVKEICDAYEELQQKNTSAHAN 118