Jatropha Genome Database

JcCA0316581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316581.10 - phase: 0 
         (398 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037670001 assembled CDS                                       550   e-157

>GSVIVT01037670001 assembled CDS
          Length = 401

 Score =  550 bits (1417), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/401 (66%), Positives = 332/401 (82%), Gaps = 5/401 (1%)

Query: 1   MEKLRRVVNEIAYT----RDQAKLSTLQRSFIPVLSFASSFYAVALALRRYLYHFGLFSK 56
           MEKLR+VVNEIAYT    ++ +KLS LQ S IP+L  +SSFY +AL+LR +LY   LF +
Sbjct: 1   MEKLRKVVNEIAYTTPLSQNLSKLSPLQCSLIPLLFLSSSFYTLALSLRHFLYRHRLFRQ 60

Query: 57  HRLPVPVISVGNLTWGGNGKTPMVEFIAQLLADSGISPLILTRGYAGGDEARMVTRHLIG 116
           HRLPVPVISVGN+TWGGNGKTPMVEF+A  LA+SGISPLIL+RGYAGGDEA+M+ R L+G
Sbjct: 61  HRLPVPVISVGNMTWGGNGKTPMVEFMALWLANSGISPLILSRGYAGGDEAKMLQRRLLG 120

Query: 117 TPAKIGIGANRAATAAGFFKRYGYTDPRNYSSKETWV-DQEVGSRLDSGKISALVLDDGM 175
             AKIG+GANRAATAA FF+RYGY DP   +  E    DQ +GS LD+ KI A++LDDGM
Sbjct: 121 RSAKIGVGANRAATAAHFFERYGYMDPGPATCLERLCFDQTMGSHLDADKIGAVILDDGM 180

Query: 176 QHWSLQRDLEIVMVNGLSPWGNCQLIPLGPLREPLTALRRADVAVVHHANLVSEQNLQDI 235
           QH SL RDLEIVMVNGL PWGN  L+PLGPLREPLTALRRADVA+VHHA+LV EQ+L+D+
Sbjct: 181 QHRSLWRDLEIVMVNGLMPWGNYHLLPLGPLREPLTALRRADVAIVHHADLVLEQSLKDV 240

Query: 236 EIMIRGVKDSLPIFFTRMSPSYFFEVGNINFRIPLDVIHDAIVLCVSAIGSANAFVLEMK 295
           E+ ++ +K+SLPIFFTRM+PS+  E+GNI+ ++PL  + D +VLCVSAIG ANAFV  + 
Sbjct: 241 ELKMQEIKESLPIFFTRMAPSHLLEMGNIDSKMPLRSVCDKVVLCVSAIGFANAFVQAIG 300

Query: 296 QLGAFYVDRIDFSDHHLFQTRDIEVIMMKLRELENKFGSKPVVVVTEKDYDRDPEILRCL 355
           ++GAFYVDR+DFSDHHLFQ +D+E+I M+L +L++KFG KPVVVVTEKDYDRDPEIL+ L
Sbjct: 301 RIGAFYVDRLDFSDHHLFQAKDVEMIRMRLGKLQDKFGLKPVVVVTEKDYDRDPEILKNL 360

Query: 356 NPFKVMTLCSELQIIPRRGSTKDGFRKLLKELLKIECSGAK 396
           +PF+V+ LCS LQ IPR G ++DGF+KL+K+LL+++ S  K
Sbjct: 361 DPFQVLILCSNLQFIPRDGRSEDGFKKLVKQLLEVKLSDGK 401