Jatropha Genome Database

JcCA0316521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.20 + phase: 0 
         (465 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018802001 assembled CDS                                       282   2e-76
GSVIVT01009860001 assembled CDS                                       169   2e-42
GSVIVT01010967001 assembled CDS                                        51   1e-06

>GSVIVT01018802001 assembled CDS
          Length = 449

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 191/474 (40%), Positives = 253/474 (53%), Gaps = 58/474 (12%)

Query: 12  WAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDLPPGFEGCHTLK 71
           WA   NLCQ KLF ++D PS+V  +A+D L  K SW+LH S+  + N LP GF+   T  
Sbjct: 12  WAPDANLCQAKLFRSKDCPSQVCLKARDGLLAKKSWILH-SDGRDTNGLPHGFKD--TRV 68

Query: 72  NPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLEAVFPRPSAIP 131
           N  K + S IP I+WK PPK VLS +W V +GEES EA+AQKLRE  V+EAV+PR SAIP
Sbjct: 69  NQSKKKVSHIPKIKWKCPPKFVLSSNWLVASGEESQEAEAQKLRENHVVEAVYPRISAIP 128

Query: 132 PGPSISLDIEEEYYDD-RLTXXXXXXXXXXXXXXXXSDSSAPVNN--LSKSPAILPTRLP 188
             PSISLDIEE + DD  +                  D +AP+N+  +SK PA+    L 
Sbjct: 129 LSPSISLDIEECHQDDCDIPLVPITSMEDEGTVDTLFDLAAPINSSMISKPPALSQDLLA 188

Query: 189 --NSAAHNIPELEPRTSKKRTHGVSPXXXXXXXXXXXXXXXXXXKSMEDGSQIDTDLLIK 246
             N++  N P LEP   +K   G+SP                  +  E GS IDTDLLIK
Sbjct: 189 SGNTSQCNRPVLEPPAIEKTALGLSPDVEADIIAAATAAITMVMRCKEQGSLIDTDLLIK 248

Query: 247 ILSDPKMIEKLINNKKPPLSPASSPTDGNLHNIFAGLKPIPKPVARSTSLPTVLSSPIPG 306
           IL++PKM EKLIN+ + P   ++ P        F+  KP+ + V  S S P ++  P P 
Sbjct: 249 ILTNPKMTEKLINDCREPGGTSTIP--------FSESKPVTQLVTVSCSEPAMVLEPRPA 300

Query: 307 SLQPPST------LSEVQPTGTRMPSQPMTRPVVANLVQSKANSFLAQPVMAPKPIPNVM 360
           +   P+       L  VQPT    P+ P   P          +SF A             
Sbjct: 301 NENIPTNGNLHNILKGVQPTLNTTPTLPDILPT---------SSFKAIKSH--------- 342

Query: 361 PPPLGVMPVKDVNYIKNLIREHGSEKK---DQ-------NYNKIQNLGFAQNLKLREEKP 410
                   VKDVNY K+L+++HG EK+   DQ       + N +Q +   QN K  E KP
Sbjct: 343 --------VKDVNYYKSLVKQHGGEKQGTQDQIIPQYANHENYLQGMELIQNFKPTELKP 394

Query: 411 KFQKPCMYYNTPRGCRNGSNCLFRHDSSFQFQTGGSIEAPGAKRIKLSGEITGR 464
           K QK C++YN+P GCRNG+NC ++HD+  Q + G  +E   AKR+KL G+ITGR
Sbjct: 395 KSQKSCIFYNSPTGCRNGTNCPYQHDTFSQLRCGSMLEDKRAKRMKLDGKITGR 448


>GSVIVT01009860001 assembled CDS
          Length = 170

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 4/151 (2%)

Query: 1   MKRSRKSNRVTWAAGVNLCQVKLFLTEDSPSKVGT---QAQDNLQKKPSWVLHHSNADEF 57
           M+  +KS RV+W + VNLCQV+LFL+EDSPS+VG     AQD+LQ K SW+LH +     
Sbjct: 1   MRGLQKSKRVSWPSDVNLCQVRLFLSEDSPSQVGQVGLGAQDHLQAKTSWLLHSNGMGSD 60

Query: 58  NDLPPGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREM 117
           ++LPPGFEG H   N LK + S IP I W+ PPK VL++ W V AGEES E + QK REM
Sbjct: 61  DNLPPGFEGAHP-ANQLKNKLSQIPLITWRCPPKFVLNFTWQVVAGEESNEVEVQKQREM 119

Query: 118 RVLEAVFPRPSAIPPGPSISLDIEEEYYDDR 148
           RVLEAV+PRPSAIPP PS+S+D E+   DD+
Sbjct: 120 RVLEAVYPRPSAIPPNPSVSIDGEDMDNDDQ 150


>GSVIVT01010967001 assembled CDS
          Length = 1084

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 64  FEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLEAV 123
           FE C  ++ P            W++PP++  +  W VG GE S E + QK R  R  E V
Sbjct: 531 FEKCKKVQIP------------WQAPPEIRFNPAWRVGTGESSKEVEVQKNRIRREKETV 578

Query: 124 FPRPSAIPPGPSISLDIEEEYYDDRLT 150
           +     IPP P    D+E + YDD LT
Sbjct: 579 YEALQDIPPNPKEPWDLEMD-YDDSLT 604