Jatropha Genome Database

JcCA0316521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022917001 assembled CDS                                        75   2e-14

>GSVIVT01022917001 assembled CDS
          Length = 275

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 55/86 (63%)

Query: 122 TTFDPFLASEISDVAFAKNYHSIDAPVSRGDRGDKNKTHAIFAGGDKVVIDRLNPLFVLM 181
           T+  P LA EI   A  KN  S+D+PVS GD G ++   AI AGGD  V++ L PL+ +M
Sbjct: 107 TSSHPGLAREIYAAAREKNCWSVDSPVSGGDIGARDGKLAILAGGDSGVVEWLTPLYNVM 166

Query: 182 GKVNYMGAPGKGQLAKLTNQIAISSH 207
           GK  Y+GAPG G   K+ NQ+ ++++
Sbjct: 167 GKGTYVGAPGCGMSCKIANQMIVAAN 192