Jatropha Genome Database

JcCA0316511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316511.20 - phase: 2 /partial
         (66 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002712001 assembled CDS                                        53   4e-08
GSVIVT01002530001 assembled CDS                                        52   5e-08

>GSVIVT01002712001 assembled CDS
          Length = 1589

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 4/41 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFH 64
           + LF  MRE+G++MDGFTLS     VITACC+D+ LI Q H
Sbjct: 125 LGLFSGMREMGLDMDGFTLS----AVITACCDDVGLIGQLH 161


>GSVIVT01002530001 assembled CDS
          Length = 640

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 4/41 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFH 64
           + LF  MRE+G++MDGFTLS     VITACC+D+ LI Q H
Sbjct: 125 LGLFSGMREMGLDMDGFTLS----AVITACCDDVGLIGQLH 161