Jatropha Genome Database

JcCA0316451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316451.20 + phase: 0 
         (360 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031907001 assembled CDS                                       500   e-142
GSVIVT01021427001 assembled CDS                                       126   1e-29
GSVIVT01024905001 assembled CDS                                        81   9e-16
GSVIVT01037232001 assembled CDS                                        72   5e-13
GSVIVT01034152001 assembled CDS                                        70   1e-12

>GSVIVT01031907001 assembled CDS
          Length = 529

 Score =  500 bits (1287), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/311 (77%), Positives = 273/311 (87%), Gaps = 4/311 (1%)

Query: 22  GFLEKTSVRGHFLRFPSFNKYPHARKLKSFDIKAQASGVTKYSSGAVEATPKEVDVKDDN 81
           GF+EK  + G  LR PS  + P +RKL   + +AQA+G TK+S   + A   + D+KD++
Sbjct: 22  GFIEKPFLCGQVLRLPSSRRCPDSRKLTVLEFRAQATGTTKFSFSTIGAIQDKADLKDED 81

Query: 82  LAFVAGATGRVGSRTVRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLN----GEGSQYV 137
           LAFVAGATGRVGSRTVRELLKLGF+VRAGVR+AQKA++L+QSVKQMKL+     EG+Q V
Sbjct: 82  LAFVAGATGRVGSRTVRELLKLGFRVRAGVRTAQKAEALIQSVKQMKLDVESASEGTQPV 141

Query: 138 EKLELVECDLEKPNEIGPALGNASVVICCIGASEKEVFDVTGPYRIDYQATKNLIDAASA 197
           EKLE+VECDLEK ++IGPALGNASVVICCIGASEKEVFD+TGPYRIDY ATKNLIDAA+ 
Sbjct: 142 EKLEIVECDLEKRDQIGPALGNASVVICCIGASEKEVFDITGPYRIDYMATKNLIDAATV 201

Query: 198 AKVKHFIMVSSLGTNKVGFPAAILNLFWGVLIWKRQAEEALIASGVPYTIVRPGGMERPT 257
           AKV HFI+++SLGTNKVGFPAAILNLFWGVLIWKR+AEEAL ASG+PYTIVRPGGMERPT
Sbjct: 202 AKVNHFILLTSLGTNKVGFPAAILNLFWGVLIWKRKAEEALFASGLPYTIVRPGGMERPT 261

Query: 258 DAYKETHNITLSEEDTLFGGQVSNLQVAELIAVMAKNRGLSYCKVVEVIAETTAPLTPME 317
           DAYKETHNITLS+EDTLFGGQVSNLQVAELIA MAKNRG SYCKVVEVIAETTAPLTP  
Sbjct: 262 DAYKETHNITLSQEDTLFGGQVSNLQVAELIAFMAKNRGSSYCKVVEVIAETTAPLTPFG 321

Query: 318 ELLAKIPSQRV 328
           ELLAKIPSQRV
Sbjct: 322 ELLAKIPSQRV 332


>GSVIVT01021427001 assembled CDS
          Length = 335

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 141/293 (48%), Gaps = 26/293 (8%)

Query: 40  NKYPHARK---LKSFDIKAQASGVTKYSSGAVEATPKEVDVKDDNLAFVAGATGRVGSRT 96
           N Y H R       F IK + S     +        +EV+V      FVAGATG  G R 
Sbjct: 57  NHYRHHRPPLPAVLFSIKRRRSHSLYSTQMEGSEITEEVEVTVKKTIFVAGATGNTGKRI 116

Query: 97  VRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYVEKLELVECDLEKPNEIGPA 156
           V +LL  GF V+AGVR   KA++           G  S  + K ++ E  ++    IG  
Sbjct: 117 VEQLLAKGFAVKAGVRDLDKAKTTFPG-------GNPSLQIVKADVTEGSVKLAEAIG-- 167

Query: 157 LGNASVVICCIGASEKEVFDVTGPYRIDYQATKNLIDAASAAKVKHFIMVSSLGTNKVGF 216
             ++  VIC  G      +D+  P+++D   T NL++A     V  FI++SS+  N    
Sbjct: 168 -DDSDAVICATGFQRS--WDLLAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGAAM 224

Query: 217 -----PAAI-LNLFWGVLIWKRQAEEALIASGVPYTIVRPGGMERPTDAYKETHNITLSE 270
                PA I LN F  +LI K QAE+ +  SG+ YTI+RPGG+         T NI +  
Sbjct: 225 GQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRND----PPTGNIVMEP 280

Query: 271 EDTLFGGQVSNLQVAELIAVMAKNRGLSYCKVVEVIAETTAPLTPMEELLAKI 323
           EDTL  G +S   VAE +AV A     +  KVVE+++ T AP    ++L A I
Sbjct: 281 EDTLSEGTISRDHVAE-VAVEALVHPEASYKVVEIVSRTDAPKRSFKDLFASI 332


>GSVIVT01024905001 assembled CDS
          Length = 354

 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 35/252 (13%)

Query: 78  KDDNLAFVAGATGRVGSRTVRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYV 137
           KD    FVAGATG+ G R  + LL+ GF VRAGV     AQ L +   + K+    ++  
Sbjct: 94  KDPGTVFVAGATGQAGIRIAQALLREGFSVRAGVSDLGAAQELARLGAKYKI--ISNEES 151

Query: 138 EKLELVECDLEKPNEIGPALGNASVVICCIGASEKEVFDVTGPY-RIDYQATKNLIDAAS 196
           ++L  VE   +    I  A+GNAS V+  IG  E       GP   +       +I AA 
Sbjct: 152 KRLNAVESSFQDAESIAKAIGNASKVVVTIGPGEN------GPTAEVTPLDALQVIQAAD 205

Query: 197 AAKVKHFIMVSSLGTNKVGFPAAILNLFWGVLIWKRQAEEALIASGVPYTIVRPGGME-- 254
            A V H  ++     ++  F ++  N               ++ + V YT++R    E  
Sbjct: 206 LAGVGHVAII----YDESPFVSSTYN--------------KVVETDVSYTLIRTNLTEDF 247

Query: 255 RPTDAYKETHNITLSEEDTLFGG--QVSNLQVAELIAVMAKNRGLSYCKVVEVIAETTAP 312
            P  +Y    N+ +S E ++     +V+  Q+A L+A +  N  ++  KVV+V  +  AP
Sbjct: 248 SPESSY----NVVVSAEGSVSSNDYKVATSQIASLVANVFSNTAVAENKVVKVFTDPGAP 303

Query: 313 LTPMEELLAKIP 324
             P  EL + IP
Sbjct: 304 SKPAVELFSAIP 315


>GSVIVT01037232001 assembled CDS
          Length = 336

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 30/206 (14%)

Query: 97  VRELLKLGFQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYVEKLELVECDLEKPNEIGPA 156
           V  LL    + R  +R  +KA SL            G Q  E L++ + D     ++  +
Sbjct: 102 VASLLDRNIKSRLLLRDPEKATSLF-----------GKQDEETLQVYKGDTRNLEDLNSS 150

Query: 157 L-GNASVVICCIGAS---EKEVFDVTGPYRIDYQATKNLIDAASAAKVKHFIMVSSLGTN 212
           +    + VICC G +    K       P ++D++  +NL+ A  ++ +K  ++VSS+G  
Sbjct: 151 IFEGVTHVICCTGTTAFPSKRWDGDNTPEKVDWEGVRNLVSALPSS-LKRIVLVSSVGVT 209

Query: 213 KVG-FPAAILNLFWGVLIWKRQAEEALIASGVPYTIVRPGGM-ERPTDAYK--------- 261
           K    P +I+NLF GVL +K+  E+ L +SG+P+TI+R G + + P  +Y          
Sbjct: 210 KFNELPWSIMNLF-GVLKYKKMGEDFLCSSGLPFTIIRAGRLTDGPYTSYDLNTLLKATA 268

Query: 262 -ETHNITLSEEDTLFGGQVSNLQVAE 286
            +   + + + D L  G+VS + VAE
Sbjct: 269 GQRRAVLMGQGDKLV-GEVSRIVVAE 293


>GSVIVT01034152001 assembled CDS
          Length = 253

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 34/188 (18%)

Query: 84  FVAGATGRVGSRTVRELLKLG--FQVRAGVRSAQKAQSLVQSVKQMKLNGEGSQYVEKLE 141
            V GA GR G    ++L +    F  R  VR+ +  +         K+ G     V    
Sbjct: 8   LVTGAGGRTGQIVYKKLKERADQFVARGLVRTEESKE---------KIGGADDVLV---- 54

Query: 142 LVECDLEKPNEIGPALGNASVVICCIGA--SEKEVFDVTG-------------PYRIDYQ 186
               D+   + I PA+     +I    A    K  FD T              P ++D+ 
Sbjct: 55  ---GDIRNADSIVPAIQGVDALIILTSAVPRMKPGFDPTKGQRPEFYFEEGAFPEQVDWI 111

Query: 187 ATKNLIDAASAAKVKHFIMVSSLGTNKVGFPAAILNLFWGVLIWKRQAEEALIASGVPYT 246
             KN ID A  A VKH ++V S+G   +  P   L     +L+WKR+AE+ L  SG+PYT
Sbjct: 112 GQKNQIDVAKTAGVKHIVLVGSMGGTDLNHPLNSLG-NGNILVWKRKAEQYLADSGIPYT 170

Query: 247 IVRPGGME 254
           I+R GG++
Sbjct: 171 IIRAGGLQ 178