Jatropha Genome Database

JcCA0316451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316451.10 - phase: 0 
         (461 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031908001 assembled CDS                                       701   0.0  
GSVIVT01003497001 assembled CDS                                        85   6e-17
GSVIVT01003494001 assembled CDS                                        79   6e-15
GSVIVT01015676001 assembled CDS                                        78   9e-15

>GSVIVT01031908001 assembled CDS
          Length = 380

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/380 (86%), Positives = 362/380 (95%)

Query: 82  MSQEYTSDIIKTLKENGNQYTWGNITVKLAEAYGFCWGVERAVQIAYEARKQFPDENIWL 141
           M++EYTSDIIKTLKENGN+Y WGN+TVKLAEAYGFCWGVERAVQIAYEARKQFP+E IW+
Sbjct: 1   MNREYTSDIIKTLKENGNEYKWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPEEKIWI 60

Query: 142 TNEVIHNPTVNQRLEEMNVQIIPVEEGRKQFEVVDSGDVVILPAFGAAVEEMLTLSDKKV 201
           TNE+IHNPTVNQRL EM V+ IP+++G+KQFEVVD GDVVILPAFGAAV+EMLTLS+K V
Sbjct: 61  TNEIIHNPTVNQRLAEMEVKDIPIDDGQKQFEVVDKGDVVILPAFGAAVDEMLTLSNKNV 120

Query: 202 QIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAQYV 261
           QIVDTTCPWVSKVWN VEKHKKG+YTSIIHGKYSHEET+ATASFAGKYIIVKNM EA YV
Sbjct: 121 QIVDTTCPWVSKVWNIVEKHKKGEYTSIIHGKYSHEETIATASFAGKYIIVKNMAEAMYV 180

Query: 262 CDYILGGQLDGSSSTREAFLEKFKNAVSEGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 321
           CDYILGG+LDGSSSTRE F EKFK A+SEGFDPD+DL KVGIANQTTMLKGETEEIGKLV
Sbjct: 181 CDYILGGELDGSSSTREEFFEKFKFAISEGFDPDIDLSKVGIANQTTMLKGETEEIGKLV 240

Query: 322 EKTMMRKFGVENVNDHFISFNTICDATQERQDAMFKLVEEKLDLILVVGGWNSSNTSHLQ 381
           E+TMMRK+GVENVN+HFISFNTICDATQERQDAM+KLVEEKLD++LVVGGWNSSNTSHLQ
Sbjct: 241 ERTMMRKYGVENVNNHFISFNTICDATQERQDAMYKLVEEKLDVMLVVGGWNSSNTSHLQ 300

Query: 382 EIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGELVVKENFLPEGPITIGVTSGASTPDKV 441
           EIAE RGIPSYWIDSE+RIGPGNRI++KL HGELV KEN+LPEGPITIGVTSGASTPDKV
Sbjct: 301 EIAEDRGIPSYWIDSEKRIGPGNRISHKLMHGELVEKENWLPEGPITIGVTSGASTPDKV 360

Query: 442 VEDALVKVFNIKREESLQVA 461
           VED L+KVF+IKREE+LQ+A
Sbjct: 361 VEDVLIKVFDIKREEALQLA 380


>GSVIVT01003497001 assembled CDS
          Length = 139

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 46/49 (93%)

Query: 46 VAMESEFDTKAFRHNLTRSKNYNRRGFGYKEETLELMSQEYTSDIIKTL 94
          VA++S+FD K FRHNL RSKNYN++GFG+K+ETLELM++EYTSDIIKT+
Sbjct: 16 VAVDSDFDAKVFRHNLMRSKNYNQKGFGHKDETLELMNREYTSDIIKTI 64


>GSVIVT01003494001 assembled CDS
          Length = 378

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 52  FDTKAFRHNLTRSKNYNRRGFGYKEETLELMSQEYTSDIIKTL 94
           FD K FRHNL RSKNYN++GFG+K+ETLELM++EYTSDIIKT+
Sbjct: 296 FDAKVFRHNLMRSKNYNQKGFGHKDETLELMNREYTSDIIKTI 338


>GSVIVT01015676001 assembled CDS
          Length = 845

 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 41/44 (93%)

Query: 51  EFDTKAFRHNLTRSKNYNRRGFGYKEETLELMSQEYTSDIIKTL 94
           +FD K F+HNL RSKNYN++GFG+K+ETLELMS+EYTSDIIKT+
Sbjct: 117 DFDAKVFQHNLMRSKNYNQKGFGHKDETLELMSREYTSDIIKTI 160