Jatropha Genome Database

JcCA0316351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316351.20 + phase: 0 
         (137 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024208001 assembled CDS                                       181   9e-47
GSVIVT01009811001 assembled CDS                                       176   4e-45
GSVIVT01025116001 assembled CDS                                       151   7e-38

>GSVIVT01024208001 assembled CDS
          Length = 822

 Score =  181 bits (459), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 97/124 (78%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDLFRSE MQLVQLIIPIESAH T+SYLGDLGL+QFKDLN EKSPFQRTYAAQIKKC EM
Sbjct: 15  MDLFRSEPMQLVQLIIPIESAHHTISYLGDLGLIQFKDLNVEKSPFQRTYAAQIKKCAEM 74

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           ARKLRFFKEQM KAG SPS+K + + +IDMD               +NAN +KLQR Y+E
Sbjct: 75  ARKLRFFKEQMSKAGLSPSAKIMMRGDIDMDDLEVKLGELEAELVEINANGEKLQRAYSE 134

Query: 121 LIEY 124
           L EY
Sbjct: 135 LAEY 138


>GSVIVT01009811001 assembled CDS
          Length = 808

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 97/124 (78%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDL RSE MQLVQLIIP+E+A+ T+SYLGDLGL QFKDLNAEKSPFQRTYA QIK+CGEM
Sbjct: 1   MDLLRSEPMQLVQLIIPVEAAYRTISYLGDLGLFQFKDLNAEKSPFQRTYATQIKRCGEM 60

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           ARKLRFFKEQM KAG SPS++SV + + ++D               + ANN+KLQR Y+E
Sbjct: 61  ARKLRFFKEQMTKAGLSPSTRSVARADFNLDDLEVQLAEFEAELTEIKANNEKLQRAYSE 120

Query: 121 LIEY 124
           L+EY
Sbjct: 121 LVEY 124


>GSVIVT01025116001 assembled CDS
          Length = 818

 Score =  151 bits (382), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 93/124 (75%)

Query: 1   MDLFRSEAMQLVQLIIPIESAHLTVSYLGDLGLLQFKDLNAEKSPFQRTYAAQIKKCGEM 60
           MDL RSE M  VQLIIP+ESAH  VSYLG+LGLLQF+DLNA+KSPFQRT+  Q+K+CGEM
Sbjct: 10  MDLMRSEKMTFVQLIIPVESAHRAVSYLGELGLLQFRDLNADKSPFQRTFVNQVKRCGEM 69

Query: 61  ARKLRFFKEQMEKAGFSPSSKSVTQTNIDMDGXXXXXXXXXXXXXXMNANNDKLQRTYNE 120
           ARKLRFFK+Q+ KAG   S++   Q +I+++               MN+N++KL++TYNE
Sbjct: 70  ARKLRFFKDQVSKAGLISSARPDLQPDIELEELEIQLSEHEHELLEMNSNSEKLRQTYNE 129

Query: 121 LIEY 124
           L+E+
Sbjct: 130 LLEF 133