Jatropha Genome Database

JcCA0316351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316351.10 + phase: 0 
         (306 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024207001 assembled CDS                                       498   e-141
GSVIVT01028118001 assembled CDS                                       147   7e-36
GSVIVT01001046001 assembled CDS                                       145   2e-35
GSVIVT01021426001 assembled CDS                                       141   4e-34
GSVIVT01025535001 assembled CDS                                       134   4e-32
GSVIVT01003253001 assembled CDS                                       134   7e-32
GSVIVT01001119001 assembled CDS                                       122   1e-28
GSVIVT01022631001 assembled CDS                                       107   8e-24

>GSVIVT01024207001 assembled CDS
          Length = 834

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/284 (86%), Positives = 259/284 (91%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L +VMEQQTVSIAKAGIIASLNARTSVLACANP GSRYNPRLSVIDNIHLPPTLLSRFDL
Sbjct: 551 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDL 610

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           IYLILDKADEQTDR LAKHIVALHFENPE+ +QDVLD+ TLT Y+SYARK IHP+LSDEA
Sbjct: 611 IYLILDKADEQTDRRLAKHIVALHFENPESLEQDVLDLPTLTAYVSYARKHIHPKLSDEA 670

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
           +EELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL EALARIR SE VEK DV+EAF
Sbjct: 671 AEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLGEALARIRFSEWVEKRDVMEAF 730

Query: 203 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRX 262
           RLLEVA+QQSATDHSTGTIDMDLITTGVSASERMRRE+LVS TRNIIMEK+QLGGPSMR 
Sbjct: 731 RLLEVALQQSATDHSTGTIDMDLITTGVSASERMRRESLVSTTRNIIMEKMQLGGPSMRL 790

Query: 263 XXXXXXXKKQSSGNEVHLQDLRNAVATLSSEGFVVTHGDSVKRI 306
                  KKQSS +E HL DLRNA+ATL+SEGFV  HGDSVKRI
Sbjct: 791 LELLEELKKQSSCSEAHLNDLRNALATLASEGFVSVHGDSVKRI 834


>GSVIVT01028118001 assembled CDS
          Length = 718

 Score =  147 bits (371), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 121/188 (64%), Gaps = 6/188 (3%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTVSIAKAGI  SLNART+VLA ANP   RY+ R +  +NI+LPP LLSRFDL
Sbjct: 453 IHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDL 512

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDV--LDIATLTTYISYARKRIHPRLSD 140
           ++LILD+AD  +D  +A+H+V +H +N E+       L+ + L  YIS AR RI P +  
Sbjct: 513 LWLILDRADMDSDLEMARHVVYVH-KNKESPALGFTPLEPSILRAYISAAR-RISPCVPK 570

Query: 141 EASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIE 200
           E  E +   Y  +R+      S     T   R + S++R+S ALAR+R SE V + DV E
Sbjct: 571 ELEEYIASAYSGIRQEEAKSSSPHSYTTV--RTLLSILRISAALARLRFSETVAQSDVDE 628

Query: 201 AFRLLEVA 208
           A RL++++
Sbjct: 629 ALRLMQMS 636


>GSVIVT01001046001 assembled CDS
          Length = 732

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 7/197 (3%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+SIAKAGI   LN+RTSVLA ANP   RY+   +  DNI L  T+LSRFDL
Sbjct: 457 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDL 516

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETA--QQDVLDIATLTTYISYARKRIHPRLSD 140
           I+++ D      D+ +A HI+ +H     T+   +   +   L  YI Y R   HPRLSD
Sbjct: 517 IFIVKDIRMYSQDKIIASHIIKVHASADATSGDTRTSKEENWLKRYIQYCRTECHPRLSD 576

Query: 141 EASEELTRGYV----EMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKH 196
            AS  L   YV    +MR++ N  G +   I  T RQ+E+++RLSEALA++RLS +  + 
Sbjct: 577 SASTMLQNNYVKIRQDMRQQANETGEA-AAIPITVRQLEAIVRLSEALAKMRLSHVATEE 635

Query: 197 DVIEAFRLLEVAMQQSA 213
           +V+EA RL  V+   +A
Sbjct: 636 NVLEAIRLFNVSTMDAA 652


>GSVIVT01021426001 assembled CDS
          Length = 776

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 124/227 (54%), Gaps = 41/227 (18%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTV+IAKAGI ASLNAR SV+A ANPI   Y+  L+   NI LP +LLSRFDL
Sbjct: 417 IHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 476

Query: 83  IYLILDKADEQTDRHLAKHIVALH-----------------FENPETA------------ 113
           ++++LD+ D   DR +++H++ +H                 +   + A            
Sbjct: 477 LFIVLDQMDADIDRQISEHVLRMHRFRSAAGGLGTLDGGSRYGKDDEADTGSSVFVKYNR 536

Query: 114 -----------QQDVLDIATLTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGS 162
                      ++D L I  L  YI YA+ RI P L+DEAS+++   Y E+ R  N    
Sbjct: 537 MLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAEL-RNSNSNAK 595

Query: 163 SKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAM 209
           +   +  T R +E++IRLS A A+++LS  V K DV  A ++L  A+
Sbjct: 596 TGGTLPITARTLETIIRLSTAHAKMKLSRQVLKSDVEAALKVLNFAI 642


>GSVIVT01025535001 assembled CDS
          Length = 553

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 134/253 (52%), Gaps = 43/253 (16%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L + MEQQ VS+AKAG++ASL+ARTSVLA ANP+G  YN   +V +N+ +   LLSRFDL
Sbjct: 247 LLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 306

Query: 83  IYLILDKADEQTDRHLAKHIVALHF---ENPETAQQDVLDIAT----------------- 122
           ++++LDK DE  D+ +++HI++LH    EN   A++  +   T                 
Sbjct: 307 VFILLDKPDELLDKRVSEHIMSLHAGCGENSPAAKRPYIAAHTVGGIDMNAKSGSLVSRL 366

Query: 123 -----------------LTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKK 165
                            L  YI+YAR  + PR+S  A+E L + Y+ +R       +S  
Sbjct: 367 RLDPKKDMDFVPLPAPLLRKYIAYARTFVFPRMSKPAAEILQKFYLRLRDH----STSAD 422

Query: 166 VITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAMQQSATDHSTGTIDMDL 225
               T RQ+ESL+RL+EA AR+ L E +   D ++   +++ ++     D   G +D   
Sbjct: 423 GTPITARQLESLVRLAEARARLDLREEITAQDALDVVEIMKESLYDKYVDEH-GFVDFGR 481

Query: 226 ITTGVSASERMRR 238
            + G+S  +  +R
Sbjct: 482 -SGGMSQQKEAKR 493


>GSVIVT01003253001 assembled CDS
          Length = 822

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 7/158 (4%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+SI KAGI A+LNARTS+LA ANP G RY+    +  N+ LPP +LSRFDL
Sbjct: 508 IHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDL 567

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           +Y+++D  D+Q D H+A HIV +H +  E A       A L  Y +YA K + P+LS EA
Sbjct: 568 VYVMIDDPDDQIDYHIAHHIVRVH-QKHEEALAPAFTTAQLKRYFAYA-KTLKPKLSSEA 625

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 180
            + L   YV +RR    PGS        PR +   +RL
Sbjct: 626 RKLLVDSYVALRRGDTTPGSR-----VQPRHVRVAVRL 658


>GSVIVT01001119001 assembled CDS
          Length = 954

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 111/210 (52%), Gaps = 36/210 (17%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQ++SI+KAGI+ SL AR SV+A ANPIG RY+   +   N+ L   ++SRFD+
Sbjct: 644 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRFDV 703

Query: 83  IYLILDKADEQTDRHLAKHIVALHFE---------------------------NPETAQQ 115
           + ++ D  D  TD  LAK +V  HF+                           +PE   Q
Sbjct: 704 LCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGTNVEDKSLSNSQDDIQPSARPLDPEILSQ 763

Query: 116 DVLDIATLTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIE 175
           D+     L  Y++YA+  + PRL D    +LT  Y E+RR      S  + +    R IE
Sbjct: 764 DL-----LKKYLTYAKLNVFPRLHDADLNKLTHVYAELRRE----SSHGQGVPIAVRHIE 814

Query: 176 SLIRLSEALARIRLSELVEKHDVIEAFRLL 205
           S+IR+SEA AR+ L + V + DV  A R+L
Sbjct: 815 SMIRMSEAHARMHLRQHVTQEDVDMAIRVL 844


>GSVIVT01022631001 assembled CDS
          Length = 665

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 12/202 (5%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+SIAKAG++ +LN RT V    NP G  Y+P  S+  N  L   LLSRFD+
Sbjct: 427 IHEAMEQQTISIAKAGLVTTLNTRTIVFGATNPKG-HYDPGQSLSVNTTLSGPLLSRFDI 485

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQD-----VLDIATLTTYISYARKRIHPR 137
           + ++LD  + + D  ++ HI+A   E  E  ++D     +  +  L  YI + +    P 
Sbjct: 486 VLVLLDTKNPEWDAVVSSHILA-EPEESENGKRDENLANIWPLPLLRRYIHFVKGYFKPV 544

Query: 138 LSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHD 197
           L+ EA E++   Y +++RR     ++      T R +ESLIRL++A AR+     V + D
Sbjct: 545 LTKEA-EKVISSYYQLQRR----SATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLD 599

Query: 198 VIEAFRLLEVAMQQSATDHSTG 219
            I A   +E +M  SA   S G
Sbjct: 600 AITAILCIESSMTTSAIVDSVG 621