Jatropha Genome Database

JcCA0316341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.30 - phase: 1 /pseudo/partial
         (79 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014837001 assembled CDS                                        99   3e-22
GSVIVT01024174001 assembled CDS                                        69   3e-13
GSVIVT01033791001 assembled CDS                                        57   2e-09

>GSVIVT01014837001 assembled CDS
          Length = 357

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 51/70 (72%)

Query: 10  KPWTLSFSFGRALQQSTLKTWGGKKENVGKAQETFLVRCKANSDXXXXXXXXXXXXXXXS 69
           KPWTLSFSFGRALQQSTLKTWGGK ENVGKAQ  FL RCKANS+               S
Sbjct: 288 KPWTLSFSFGRALQQSTLKTWGGKTENVGKAQGAFLGRCKANSEATLGKYEGGTGGGLAS 347

Query: 70  ESLFVKGYKY 79
           ESL+VKGYKY
Sbjct: 348 ESLYVKGYKY 357


>GSVIVT01024174001 assembled CDS
          Length = 267

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 11  PWTLSFSFGRALQQSTLKTWGGKKENVGKAQETFLVRCKANSDXXXXXXXXXXXXXXXSE 70
           PW +SFS+ RALQ + LKTWGG+ E+V +AQE  L+R KANS                 +
Sbjct: 199 PWHVSFSYARALQNTCLKTWGGRPESVKEAQEALLIRAKANSLAQLGKYTGEGESEEAKK 258

Query: 71  SLFVKGYKY 79
            +FVKGY Y
Sbjct: 259 GMFVKGYVY 267


>GSVIVT01033791001 assembled CDS
          Length = 335

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 10  KPWTLSFSFGRALQQSTLKTWGGKKENVGKAQ 41
           KPW LSFSFGRALQQSTLK W GK+ENV KA+
Sbjct: 270 KPWNLSFSFGRALQQSTLKAWSGKEENVVKAR 301