Jatropha Genome Database

JcCA0316341.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.20 - phase: 0 
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014834001 assembled CDS                                       134   4e-32
GSVIVT01031450001 assembled CDS                                        54   5e-08

>GSVIVT01014834001 assembled CDS
          Length = 157

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 80/98 (81%), Gaps = 2/98 (2%)

Query: 40  PNSESKRSRKQPVFIHHPRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSP 99
           P+  ++   KQ   +   +PRRTNP+VW  AILCLIFSL+LIFFGIATLII+L IKP++P
Sbjct: 11  PDPGTRIVTKQATLLR--QPRRTNPMVWCCAILCLIFSLILIFFGIATLIIFLVIKPKTP 68

Query: 100 VFDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKID 137
           +FD P  +L+++YFDSPEYFNGD TFLANFSNPN+KI+
Sbjct: 69  LFDIPGVSLSSVYFDSPEYFNGDFTFLANFSNPNRKIN 106



 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 37/40 (92%)

Query: 209 KVRANLGLLHYSYWLHGRCEIEMTGPPTGVLVARSCKTKR 248
           ++ ANLGL H+SYWLHGRC+++MTGPPTGVLV RSC+TKR
Sbjct: 118 QIWANLGLTHFSYWLHGRCQLDMTGPPTGVLVTRSCRTKR 157


>GSVIVT01031450001 assembled CDS
          Length = 265

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 91  YLSIKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYAEIELYFY 150
           +L +KP+   +D  + +++     S  + N    F+    NPN+K+ + ++  E+ + + 
Sbjct: 108 WLVVKPKGLAYDIEDGSIHGFGL-SNNHLNATFHFVLRAYNPNRKVSIYYDSMEVSVSYD 166

Query: 151 DRLIGIQALQPFTQRRRE-TRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFK 209
           D+ +    +QPF QR R  TRLE V +++  + L    + +L     S KV   +R   +
Sbjct: 167 DQTMASNGVQPFFQRHRNVTRLE-VQLVAQSLLLSGPVSKDLHLDRSSGKVELEVRVKAR 225

Query: 210 VRANLGL 216
           +R  +G+
Sbjct: 226 IRFKVGI 232