Jatropha Genome Database

JcCA0316341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.10 + phase: 0 /partial
         (138 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014835001 assembled CDS                                       147   2e-36
GSVIVT01024255001 assembled CDS                                        50   3e-07
GSVIVT01026587001 assembled CDS                                        48   2e-06

>GSVIVT01014835001 assembled CDS
          Length = 407

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/79 (87%), Positives = 75/79 (94%)

Query: 57  ERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQE 116
           ER L PIEL VEDISYQHAGHAGVRGSDGETHFNL+VVS+EFEGKSLVKRHR++Y LLQE
Sbjct: 314 ERALSPIELLVEDISYQHAGHAGVRGSDGETHFNLKVVSEEFEGKSLVKRHRVVYDLLQE 373

Query: 117 ELQSGLHALSIVAKTPAEV 135
           ELQ+GLHALSIVAKTP+EV
Sbjct: 374 ELQNGLHALSIVAKTPSEV 392


>GSVIVT01024255001 assembled CDS
          Length = 80

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 88  HFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHAL-SIVAKTPAEVDAR 138
           H ++ V+S  FEG+S V R R++Y  + EELQS +HA+  +  +TP E  A+
Sbjct: 28  HVSIDVISSAFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMSTRTPTEAAAK 79


>GSVIVT01026587001 assembled CDS
          Length = 93

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 13/74 (17%)

Query: 60  LKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQ 119
           + P  LEV D S    G  G         F + +VS++FEGK L++RHR++   LQEEL+
Sbjct: 16  MNPSHLEVIDTS----GGCGAS-------FAIEIVSEQFEGKRLLERHRMVNAALQEELK 64

Query: 120 SGLHALSI-VAKTP 132
             +HALSI  A TP
Sbjct: 65  Q-IHALSIKKALTP 77