Jatropha Genome Database

JcCA0316311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.30 - phase: 0 /pseudo/partial
         (730 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032038001 assembled CDS                                       300   1e-81

>GSVIVT01032038001 assembled CDS
          Length = 709

 Score =  300 bits (768), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 256/477 (53%), Gaps = 49/477 (10%)

Query: 239 GSPDFRDPGPSNQTEVINSMLNDDNSP---PEIEIMRDPVQGFSPEKLPSGFPDHQNDAF 295
           G+  F+DPGPS+Q E +N M N++  P   PE+E+MRD V     E+LP  +P+H ND  
Sbjct: 227 GNAGFQDPGPSHQMEQLNEMFNEETVPQEVPEMEVMRDAVHDLQSERLPV-WPEHGNDTT 285

Query: 296 QPTTSFDQGLNEKEIPSPFKEDALPSGGQPSPFQRHSEAPEKFITDISF--GNRSPELAI 353
           +   S DQ LNEKEI SP   D L SG Q  PFQ+ + +    +  +S   G+ SP LAI
Sbjct: 286 ELDRSLDQMLNEKEILSPNMPDILYSGEQSLPFQQRANSILPCLNLLSHVSGHVSPALAI 345

Query: 354 RSTXXXXXXXXXXXXXXHFFDESTVLTNK--------------RRKEIPSTALGIWKLNK 399
            ST                FD S VL NK              ++K +P +AL IWK+N 
Sbjct: 346 GSTPPVEKPKAKSRKRKQLFDVSLVLPNKLMKKALEDSSGLLRKKKRLPCSALDIWKINI 405

Query: 400 NLRREQVLYEPSLTGYSANICNLFKRDYIITKSHLTLEREATPEPRVVTSPAPSTE-AIA 458
             R+E V +EPS+TG   ++ N F+ D I  K HL +  +A PEP V  SPAP  E A  
Sbjct: 406 KSRKENVFFEPSVTGMCEDLHNTFREDVISLKPHLAITEQAFPEPLVAQSPAPMPEKAFP 465

Query: 459 EARDANSPAPATEVVIEDRDVA-SPAXXXXXXXXXXVAQSPASEAEPDLEIERLRHHEGQ 517
           E   A SPAP  E      +VA SP             QSPA   + D+EIERLR HEG 
Sbjct: 466 EPSVARSPAPMPEEAFPGPEVAPSPDAMPEEAIPEPGVQSPAPMPDLDIEIERLRDHEGN 525

Query: 518 DGNRLLPD---SPARFIPSPGRFVSSPFRRDDFTPNTQKNLGSGSVPWAQTSIETEVMPT 574
            G+ +LP+   SP R I SP RF SS   R DFTP +  + GS   P   T   T  +PT
Sbjct: 526 AGSNILPEIMPSPTRLIYSPTRFPSSSI-RGDFTPISTGDKGSELDPMVGTDFGTRSLPT 584

Query: 575 PGVSASPGTCTTEPETPRTFLEDQFDLGHTGLSDIPESIAETEDLYFLEADNTPAGSQGT 634
           P  S S GT  ++ ETP TF+EDQ  + +TGLSDIPE +   E                 
Sbjct: 585 PDFSMSAGTFGSDLETPATFMEDQLGVENTGLSDIPELVNSAE----------------- 627

Query: 635 QSIDSLSVRSRAVAQYLKRHSLSTPLSGDQSRDLSLNKILQGKTRKLCARMFFETLV 691
               SLSV   AVAQYL+ HS   P+S D S +LSLNKIL+GKTRK+ ARMFFETLV
Sbjct: 628 ---VSLSV---AVAQYLQNHSPINPISEDPSMELSLNKILEGKTRKIAARMFFETLV 678