Jatropha Genome Database

JcCA0316311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.10 - phase: 0 /pseudo
         (254 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005594001 assembled CDS                                        88   5e-18
GSVIVT01007226001 assembled CDS                                        87   6e-18
GSVIVT01005388001 assembled CDS                                        87   9e-18

>GSVIVT01005594001 assembled CDS
          Length = 193

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 41  KVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNKT 100
           K++ D RF S+H DPRFQKV   K+KV IDSRF+RMF DK+F SS+APLDKRGK KK+++
Sbjct: 27  KIVTDARFSSLHSDPRFQKVPKHKTKVEIDSRFNRMFHDKSFTSSSAPLDKRGKPKKDRS 86

Query: 101 ENAL 104
            N L
Sbjct: 87  GNTL 90


>GSVIVT01007226001 assembled CDS
          Length = 738

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 41  KVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNKT 100
           K++ D RF S+H DPRFQKV   K+KV IDSRF+RMF DK+F SS+APLDKRGK KK+++
Sbjct: 35  KIVTDARFSSLHSDPRFQKVPKHKTKVEIDSRFNRMFHDKSFTSSSAPLDKRGKPKKDRS 94

Query: 101 ENAL 104
            N L
Sbjct: 95  GNTL 98


>GSVIVT01005388001 assembled CDS
          Length = 155

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 41  KVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNKT 100
           K++ D RF S+H DPRFQKV   K+KV IDSRF+RMF DK+F SS+APLDKRGK KK+++
Sbjct: 70  KIVTDARFSSLHSDPRFQKVPKHKTKVEIDSRFNRMFHDKSFTSSSAPLDKRGKPKKDRS 129

Query: 101 ENAL 104
            N L
Sbjct: 130 GNTL 133