Jatropha Genome Database

JcCA0316161.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.30 + phase: 0 
         (268 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013358001 assembled CDS                                       280   7e-76
GSVIVT01003829001 assembled CDS                                       274   4e-74
GSVIVT01035030001 assembled CDS                                       183   6e-47
GSVIVT01035272001 assembled CDS                                       181   3e-46
GSVIVT01035031001 assembled CDS                                       181   4e-46
GSVIVT01033214001 assembled CDS                                       164   5e-41
GSVIVT01033207001 assembled CDS                                       154   6e-38
GSVIVT01024400001 assembled CDS                                        57   9e-09
GSVIVT01033646001 assembled CDS                                        50   1e-06
GSVIVT01031892001 assembled CDS                                        48   6e-06

>GSVIVT01013358001 assembled CDS
          Length = 411

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/200 (67%), Positives = 160/200 (80%), Gaps = 20/200 (10%)

Query: 4   LKCSAKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRG 63
           ++CSA +VPL+PISFLERSA VYRD++++VYG VK+TWR+T +RC +LASA+ H GISRG
Sbjct: 14  IRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAITHLGISRG 73

Query: 64  DVVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPI 123
           DVVAALAPNIPA++ELHFGVPMAGAVLCTLNIRHDSAMVS LL+HSEAK IFVDYQ L  
Sbjct: 74  DVVAALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVSTLLKHSEAKMIFVDYQLLDT 133

Query: 124 AQGALELLTKTGSKLPFIVLIQDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNVEWDP 183
           AQGALE+L+KT +KLP                    +YE+L+AMGK DF+I  PN EWDP
Sbjct: 134 AQGALEILSKTRTKLP--------------------QYETLIAMGKTDFDIRWPNDEWDP 173

Query: 184 ISLNYTSGTTSSPKGVRGAH 203
           I+LNYTSGTTS PKGV  +H
Sbjct: 174 IALNYTSGTTSRPKGVIYSH 193


>GSVIVT01003829001 assembled CDS
          Length = 586

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 4   LKCSAKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRG 63
           ++C    VPL+PI+FLERSA  YRD+ SVVYG VKYTW ET +RC+KLASAL   GISRG
Sbjct: 49  VRCPVNDVPLSPITFLERSATAYRDRTSVVYGSVKYTWSETQERCLKLASALTQLGISRG 108

Query: 64  DVVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPI 123
           DVVA LAPN+PA++ELHFGVPMAGAVLCTLN RH+SAMVS LLRHSEAK IFVDYQ L I
Sbjct: 109 DVVAVLAPNVPAMYELHFGVPMAGAVLCTLNTRHNSAMVSTLLRHSEAKIIFVDYQLLEI 168

Query: 124 AQGALELLTKTGSKLPFIVLI--QDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNVEW 181
           A  AL+LL KT +K P +VLI   D + P   S+    EYESLLA G+ +FEI RP  EW
Sbjct: 169 AHVALDLLKKTETKPPILVLIVESDGSPPTNFSTSDGYEYESLLATGQSEFEIRRPIDEW 228

Query: 182 DPISLNYTSGTTSSPKGVRGAH 203
           DPIS+NYTSGTTSSPKGV   H
Sbjct: 229 DPISVNYTSGTTSSPKGVVYNH 250


>GSVIVT01035030001 assembled CDS
          Length = 513

 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 140/212 (66%), Gaps = 13/212 (6%)

Query: 5   KCSAKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRGD 64
           K +A Y  LTP+ FLER+A+V+ ++ SV++G ++YTW +TYQRC +LASAL+ + I  G 
Sbjct: 12  KNAANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSKYSIGAGS 71

Query: 65  VVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPIA 124
            VA +APNIPA++E HFGVPM+GAV+  +NIR ++  ++ LL HS A  + VD +F P+A
Sbjct: 72  TVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAVVMVDQEFFPLA 131

Query: 125 QGALELL---TKTGSKLPFIVLIQD--CNQPAPIS---SKGNLEYESLLAMGKLDFEIIR 176
           + AL++    +K   K P +++I D  C+ P  +     KG +EYE  L  G  +F    
Sbjct: 132 EEALKIWSGKSKNDFKPPLLIVIADESCD-PKGLEYALRKGVIEYEQFLETGDPEFAWKP 190

Query: 177 PNVEWDPISLNYTSGTTSSPKGV----RGAHL 204
           P  EW  I+L YTSGTT+SPKGV    RGA++
Sbjct: 191 PQDEWQSIALGYTSGTTASPKGVVLHHRGAYV 222


>GSVIVT01035272001 assembled CDS
          Length = 444

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 134/210 (63%), Gaps = 29/210 (13%)

Query: 1   MERL-KCSAKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHG 59
           M+RL K +A Y  LTPI+FL R+A+ Y  K S++Y   ++TW++TY+RC +LAS+L    
Sbjct: 1   MDRLPKSAANYTALTPINFLTRAAVAYARKTSLIYESTRFTWQQTYERCCRLASSLHRLN 60

Query: 60  ISRGDVVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQ 119
           +++ DVV+ LAPNIPA++E+HF VPM GAVL T+NIR D+  ++ +L HSEAK  FVDYQ
Sbjct: 61  VAKNDVVSVLAPNIPAMYEMHFAVPMCGAVLNTINIRLDAHNIATILGHSEAKVFFVDYQ 120

Query: 120 FLPIAQGALELLTKTGSKLPFIVLIQDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNV 179
           ++P+A+ AL LL     +                        + L+A G   +  +    
Sbjct: 121 YVPLAREALLLLMAQHKE------------------------KLLVANGNPGYAPVEVED 156

Query: 180 EWDPISLNYTSGTTSSPKGV----RGAHLN 205
           EWDPI+LNYTSGTTS+PKGV    RGA+L+
Sbjct: 157 EWDPIALNYTSGTTSAPKGVVYSHRGAYLS 186


>GSVIVT01035031001 assembled CDS
          Length = 335

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 138/211 (65%), Gaps = 11/211 (5%)

Query: 5   KCSAKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRGD 64
           K +A Y  LTP+  LER+A+V+ ++ SV++G ++YTW +TYQRC +LASAL+ + I  G 
Sbjct: 12  KNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLASALSKYSIGAGS 71

Query: 65  VVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPIA 124
            VA +APNIPA +E HFGVPM+GAV+  +NIR ++  ++ LL HS A  + VD +F P+A
Sbjct: 72  TVAIIAPNIPAKYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAVVMVDQEFFPLA 131

Query: 125 QGALELL---TKTGSKLPFIVLIQD--CNQPAPISS--KGNLEYESLLAMGKLDFEIIRP 177
           + AL++    +K   K P +++I D  C+  A   +  KG +EYE  L  G  +F    P
Sbjct: 132 EEALKIWSDKSKNDFKPPLLIVIADESCDPKALEYALRKGVIEYEQFLETGDPEFAWKPP 191

Query: 178 NVEWDPISLNYTSGTTSSPKGV----RGAHL 204
             EW  I+L YTSGTT+SPKGV    RGA++
Sbjct: 192 QDEWQSIALGYTSGTTASPKGVVLHHRGAYI 222


>GSVIVT01033214001 assembled CDS
          Length = 509

 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 120/204 (58%), Gaps = 41/204 (20%)

Query: 1   MERLKCS-AKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHG 59
           ME LK   A   PLT +SFL+R+A VY D  SVVY    YTW +T+ RC+++AS++   G
Sbjct: 40  MEELKPRPANSSPLTTLSFLDRAATVYGDCPSVVYNSTTYTWSQTHHRCLQVASSIKSLG 99

Query: 60  ISRGDVVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQ 119
           I RG VV+ +APNIPA++ELHF VPMAGAVL T+N R D+  VSVLLRHSE+K IFVDYQ
Sbjct: 100 IGRGQVVSVVAPNIPAMYELHFAVPMAGAVLNTINTRLDAKTVSVLLRHSESKLIFVDYQ 159

Query: 120 FLPIAQGALELLTKTGSKLPFIVLIQDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNV 179
             P+   +L L                     P SS+                   RP +
Sbjct: 160 SRPLILESLSLF--------------------PPSSQ-------------------RP-L 179

Query: 180 EWDPISLNYTSGTTSSPKGVRGAH 203
            W+P+ LNYTSGTTSSPKGV   H
Sbjct: 180 LWNPMILNYTSGTTSSPKGVVHCH 203


>GSVIVT01033207001 assembled CDS
          Length = 449

 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 40/196 (20%)

Query: 8   AKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRGDVVA 67
           A   PLTP+ FL+R+A VY D  SV+Y  + YTW +T++RC+++AS++   GI RG VV+
Sbjct: 9   ANSSPLTPLGFLDRAATVYGDCPSVLYNSITYTWSQTHRRCLQVASSIKSFGIGRGHVVS 68

Query: 68  ALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPIAQGA 127
            +APN+PA++ELHF VPM+GAVL T+N R D+  VSVLLRHSE+K +FVD     +   A
Sbjct: 69  VVAPNVPAMYELHFAVPMSGAVLNTINTRLDARTVSVLLRHSESKLVFVDCLSRALILEA 128

Query: 128 LELLTKTGSKLPFIVLIQDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNVEWDPISLN 187
           L L     ++ P +                                       WDPI LN
Sbjct: 129 LSLFPPN-TQWPLL---------------------------------------WDPIILN 148

Query: 188 YTSGTTSSPKGVRGAH 203
           YTSGTTSSPKGV   H
Sbjct: 149 YTSGTTSSPKGVVHCH 164


>GSVIVT01024400001 assembled CDS
          Length = 512

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 25/199 (12%)

Query: 8   AKYVPLTPISFLERSAIVYRDKLSVVYGDVKYTWRETYQRCIKLASALAHHGISRGDVVA 67
           + ++PL    F   S    R  L V   +  Y++ ET+    K+ +  AH G+ +GDVV 
Sbjct: 20  SNHLPLHTYCFENYSQFADRPCLIVGSTNKTYSFAETHLISRKVGAGFAHLGLKQGDVVM 79

Query: 68  ALAPNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPIAQGA 127
            L  N         G  M GAV  T N  + SA +   L  S+AK +    Q+       
Sbjct: 80  ILLQNCAEFAFSFLGASMVGAVTTTANPFYTSAEIFKQLNASKAKIVVTQAQY------- 132

Query: 128 LELLTKTGSKLPFIVLI---QDCNQPAPISSKGNLEYESLLAMGKLDFEIIRPNVEWDPI 184
              + K G     I +    ++C   + +S       ES L    ++ +        DP+
Sbjct: 133 ---VAKIGEGFTVITIDDPPENCMHFSVVSEAN----ESELPEVSINSD--------DPV 177

Query: 185 SLNYTSGTTSSPKGVRGAH 203
           +L ++SGTT  PKGV   H
Sbjct: 178 ALPFSSGTTGLPKGVVLTH 196


>GSVIVT01033646001 assembled CDS
          Length = 649

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 13  LTPISFLERSAIVYRDKLSVVYGDV--KYTWRETYQRCIKLASALAHHGISRGDVVAALA 70
           ++ +SFL R    +  +L++V  D     T+ +      +LA + A  GI++ DVV   A
Sbjct: 22  ISMLSFLFRKTSSFSTRLALVDSDSGETLTFFQLKSTVSRLAHSFAQLGITKNDVVLIFA 81

Query: 71  PNIPALFELHFGVPMAGAVLCTLNIRHDSAMVSVLLRHSEAKAIFVDYQFLPIAQGALEL 130
           PN          +   GA+  T N  +  + +S  ++ S  K +             + L
Sbjct: 82  PNSVRFPVCFLAIVALGAIATTANPLYTISELSKQVKDSNPKFV-------------INL 128

Query: 131 LTKTGS-KLPFIVLIQDCNQPAPISSKGNLEYESLLAMGKLDFEIIRP---NVEWDPISL 186
             K  +  L F++L    +Q  P SS   + Y S L     D ++  P    V+ D ++L
Sbjct: 129 WDKVKNFDLTFVILSSSASQRLP-SSNSRVWYYSDLIKTPEDRDLDFPPASVVQTDTVAL 187

Query: 187 NYTSGTTSSPKGVRGAHLN 205
            Y+SGTT + KGV   H N
Sbjct: 188 LYSSGTTGTSKGVILTHRN 206


>GSVIVT01031892001 assembled CDS
          Length = 659

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 40  TWRETYQRCIKLASALAHHGISRGDVVAALAPNIPALFELHFGVPMAGAVLCTLNIRHDS 99
           T+RE Y   +++ SA+   G++ GD       N P                  L     +
Sbjct: 78  TYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIPYVPLYDSLGA 137

Query: 100 AMVSVLLRHSEAKAIFVDYQFLPIAQGALELLTKTGSKLPFIV----LIQDCNQPAPISS 155
             V  ++ H+E    FV    +P     L  L K  S L  I+    +     + A    
Sbjct: 138 NAVEFIINHAEVSIAFVQESKIP---AMLTCLPKCTSYLKTIISFGKISSSQKEEAEELG 194

Query: 156 KGNLEYESLLAMGKLDFEIIRPNVEWDPISLNYTSGTTSSPKGV 199
                +E    +G LD E + P  + D  ++ YTSGTT  PKGV
Sbjct: 195 VSCFSWEEFALLGSLDCE-LPPKQKTDICTIMYTSGTTGEPKGV 237