Jatropha Genome Database

JcCA0316161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.20 - phase: 0 
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008671001 assembled CDS                                       217   4e-57

>GSVIVT01008671001 assembled CDS
          Length = 205

 Score =  217 bits (552), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 139/204 (68%), Gaps = 2/204 (0%)

Query: 1   MKSDRRPPLAKSPIRLRPRRVLQXXXXXVQTPPGSLTKSQKPNLTREMEESDLRSENHTM 60
           M+S+ +PPL  SPI+LR RRVL+     +QTPPGSLTK+   N T+ +EES LR E  T+
Sbjct: 4   MRSNGKPPLGNSPIQLRSRRVLRSSATTIQTPPGSLTKTL--NRTQVIEESGLRPEYLTI 61

Query: 61  SCELRALARMVQDELGNAXXXXXXXXXXXXXXXXPLFERGRFYEVYSARRNXXXXXXXXX 120
           SCEL+ALA++V++ELGN                 PLFERGRFY+ YSARRN         
Sbjct: 62  SCELQALAKIVRNELGNGSSENVGFPNTFGANSSPLFERGRFYDEYSARRNERLKRKKGE 121

Query: 121 XXXXXXXPYHLGVTVESSKKRDSKKLESLRKSVSAAYSVERSANPRYSLRSLSKENKKPP 180
                  PY LGVTVE SK+RD+KK ESLRKSV AA SV+RS NPRY LRS +KENKKPP
Sbjct: 122 TGDVGKTPYKLGVTVEPSKRRDTKKFESLRKSVPAALSVDRSENPRYLLRSSTKENKKPP 181

Query: 181 LPFNVEKSVCPSERKVGTRRVRKI 204
           +PFNVEKS    +RK+G RRVRK+
Sbjct: 182 MPFNVEKSAVAGDRKIGARRVRKV 205