Jatropha Genome Database

JcCA0316161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.10 + phase: 0 
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008672001 assembled CDS                                       420   e-118
GSVIVT01016551001 assembled CDS                                        60   1e-09

>GSVIVT01008672001 assembled CDS
          Length = 243

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/247 (87%), Positives = 223/247 (90%), Gaps = 17/247 (6%)

Query: 4   NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQVYGEDR 63
           NKYSII+PTYNERLNIALIV+LIFKHLRDVDFEII+VDDGSPDGTQE+VKQLQQVYGEDR
Sbjct: 10  NKYSIIVPTYNERLNIALIVFLIFKHLRDVDFEIIIVDDGSPDGTQEIVKQLQQVYGEDR 69

Query: 64  ILLRPRPKKLGLGTAYVHGLKHASGNFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGT 123
           ILLR RPKKLGLGTAY HGLKHASGNFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGT
Sbjct: 70  ILLRARPKKLGLGTAYSHGLKHASGNFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGT 129

Query: 124 RYVKGGGVHGWNLMRKLTSRGANVLAHTLLWPGVSDLTGSFRLYKKSVLEDIISSVVSKG 183
           RYVKGGGVHGWNLMRKLTSRGANVLA TLLWPGVSDLTGSFRLYKKSVLE++ISS VSKG
Sbjct: 130 RYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEEVISSCVSKG 189

Query: 184 YVFQMEMIVRASRKGYHIEE-PLA---RLFFTGSKLLLLIEFLEVPKLGGSEIVEYLKGL 239
           YVFQME+IVRASRKGYHIEE P+    RLF  GS            KLGGSEIV YLKGL
Sbjct: 190 YVFQMEIIVRASRKGYHIEEVPITFVDRLF--GSS-----------KLGGSEIVGYLKGL 236

Query: 240 AYLLVTT 246
           AYLLVTT
Sbjct: 237 AYLLVTT 243


>GSVIVT01016551001 assembled CDS
          Length = 336

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 35/217 (16%)

Query: 7   SIIIPTYNERLNIA-----LIVYLIFKHLRDVDF--EIIVVDDGSPDGTQEVVKQLQQVY 59
           S+IIP +NE L +       + YL  +  +D  F  E+++VDDGS DGT  V     + Y
Sbjct: 70  SLIIPAFNEELRLPGALDETMNYLQQRAAKDKSFSYEVVIVDDGSADGTNRVAFDFVKKY 129

Query: 60  GEDRILLRPRPKKLGLGTAYVHGLKHASGNFVVIMDA-------DLSHHPKYLPSFIKKQ 112
             D + +    +  G G A   G+ H+ G  ++++DA       DL      +     K+
Sbjct: 130 TIDNVRVILLGRNYGKGEAIRQGMLHSRGELLLMLDADGATKVTDLEKLENQIHVVAMKE 189

Query: 113 LETGASIVTGTRYVK---------GGGVH---------GWNLMRKLTSRGANVLAHTLLW 154
           ++ G S  TG   ++         G   H          W   R    +G +V+      
Sbjct: 190 IQFGDS-ATGDSSLRISDIPLAAFGSRAHLEEKALATRKW--YRNFLMKGFHVVVLLTAG 246

Query: 155 PGVSDLTGSFRLYKKSVLEDIISSVVSKGYVFQMEMI 191
           PG+ D    F+++ ++    + +++  K + F +E++
Sbjct: 247 PGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELV 283