Jatropha Genome Database

JcCA0316141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316141.30 - phase: 1 /partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003955001 assembled CDS                                       426   e-120
GSVIVT01029112001 assembled CDS                                       384   e-107
GSVIVT01029169001 assembled CDS                                       384   e-107
GSVIVT01029109001 assembled CDS                                       379   e-106
GSVIVT01017832001 assembled CDS                                       365   e-102
GSVIVT01035799001 assembled CDS                                       308   1e-84
GSVIVT01008607001 assembled CDS                                        54   5e-08
GSVIVT01000944001 assembled CDS                                        49   2e-06

>GSVIVT01003955001 assembled CDS
          Length = 718

 Score =  426 bits (1095), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/237 (85%), Positives = 223/237 (94%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +V+HDVDLQKLPVRFA+DRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAEL+H
Sbjct: 475 YDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMH 534

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFRFPRGNGIGA LPP+NKGTPLEIGKGRIL EG+ VA+LGYGSIV+
Sbjct: 535 MVATAAAIDDRPSCFRFPRGNGIGAVLPPDNKGTPLEIGKGRILAEGHRVALLGYGSIVQ 594

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
           QCVEAA+ LR+++I VTV DARFCKPLD DLIRRL +EHEILITVEEGSIGGF SHVSHF
Sbjct: 595 QCVEAASILRSQNIFVTVVDARFCKPLDGDLIRRLAKEHEILITVEEGSIGGFGSHVSHF 654

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEAL 240
           L L+GI+DG LKLR+MVLPDRYIDHGSP+DQIQEAGLSS HI+ATVLSLLG+ KEAL
Sbjct: 655 LCLNGIMDGPLKLRAMVLPDRYIDHGSPEDQIQEAGLSSKHISATVLSLLGRQKEAL 711


>GSVIVT01029112001 assembled CDS
          Length = 735

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 210/239 (87%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +V HDVDLQKLPVRFA+DRAGLVGADGPTHCGAFD T+MACLPNMVVMAPS E+EL+H
Sbjct: 494 FDQVAHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSCESELMH 553

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+PRGNGIG+ LP NNKGTPLEIGKGR+L EG+ VAILGYG++V+
Sbjct: 554 MVATAAAIDDRPSCFRYPRGNGIGSILPQNNKGTPLEIGKGRVLKEGSRVAILGYGTVVQ 613

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            C+ A+  L+   +S TVADARFCKPLD DLIR+L +EHE+LITVEEGSIGGF SHVSHF
Sbjct: 614 NCLAASKLLQVLGVSTTVADARFCKPLDGDLIRQLAQEHEVLITVEEGSIGGFSSHVSHF 673

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEALQF 242
           L L+G+LDG LK R M+LPDRYI+HGS  +Q++EAGLSS HIAATVLSL+G+ K++L  
Sbjct: 674 LGLNGLLDGTLKWRPMMLPDRYINHGSQTEQVEEAGLSSRHIAATVLSLIGENKDSLHL 732


>GSVIVT01029169001 assembled CDS
          Length = 808

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/238 (75%), Positives = 212/238 (89%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVDLQKLPVRFA+DRAGLVGADGPTHCGAFD T+MACLPNMVVMAPS E EL++
Sbjct: 566 FDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSCERELMN 625

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+PRGNGIG+ +PP NKGTPLE+GKGR+L EG  VAILGYG+IV+
Sbjct: 626 MVATAAAIDDRPSCFRYPRGNGIGSIIPPFNKGTPLEVGKGRVLEEGTRVAILGYGTIVQ 685

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            CV A++ L+   IS TV DARFCKPLD DLIR+L REHE+L+TVEEGSIGGF SHVSHF
Sbjct: 686 SCVAASHLLQRFGISATVVDARFCKPLDGDLIRQLAREHEVLLTVEEGSIGGFGSHVSHF 745

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEALQ 241
           L+L+G+LDG LK R+M+LPDRYIDHGS ++QI+EAGL+S HIAATVL+L+G+ K+AL 
Sbjct: 746 LALNGLLDGTLKWRAMMLPDRYIDHGSQREQIEEAGLTSKHIAATVLALIGENKDALH 803


>GSVIVT01029109001 assembled CDS
          Length = 690

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/239 (74%), Positives = 207/239 (86%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +V HDVDLQKLPVRFA+DRAGLVGADGPTHCGAFD T+MACLPNMVVMAPS E+EL+H
Sbjct: 449 FDQVAHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSCESELMH 508

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+P GNGIG+ LP NNKGTPLEIGKGR+L EG+ VAILGYG+IV+
Sbjct: 509 MVATAAAIDDRPSCFRYPGGNGIGSILPQNNKGTPLEIGKGRVLKEGSRVAILGYGTIVQ 568

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            C+ A   L+   +S TVADARFCKPLD DLIR+L +EHE+LITVEEGSIGGF SHVSHF
Sbjct: 569 NCLAAGKLLQVLGVSTTVADARFCKPLDGDLIRQLAQEHEVLITVEEGSIGGFSSHVSHF 628

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEALQF 242
           L L+G+LDG LK R M+LPDRYI+HGS  +Q +EAGLSS HIAATVLS++G+ K++L  
Sbjct: 629 LGLNGLLDGKLKWRPMMLPDRYINHGSQTEQFEEAGLSSRHIAATVLSVMGENKDSLHL 687


>GSVIVT01017832001 assembled CDS
          Length = 716

 Score =  365 bits (938), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 167/238 (70%), Positives = 203/238 (85%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVDLQKLPV+FA+DRAGLVGADGPTHCGAFD+T+MACLPNMVVMAP+DEAEL H
Sbjct: 476 YDQVVHDVDLQKLPVKFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPADEAELFH 535

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+PRGNG+G  LPP NKG P+E+G+GRIL+EG  VA+LGYG+ V+
Sbjct: 536 MVATAAAIDDRPSCFRYPRGNGVGVELPPGNKGIPIEVGRGRILIEGERVALLGYGTAVQ 595

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            C+ A++ L    + +TVADARFCKPLD  LIR L + HE+LITVEEGSIGGF SHV+ F
Sbjct: 596 SCLVASSLLEQHGLRITVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVAQF 655

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEALQ 241
           L+L+G+LDG  K   MVLPDRYIDHG+P DQ+  AGL+ +HIAATV ++LG+ +EAL+
Sbjct: 656 LALNGLLDGTTKWSPMVLPDRYIDHGAPADQLAMAGLTPSHIAATVFNILGQTREALE 713


>GSVIVT01035799001 assembled CDS
          Length = 719

 Score =  308 bits (789), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/237 (62%), Positives = 185/237 (78%), Gaps = 1/237 (0%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVD Q++PVRFA+  AGLVG+DGPT CGAFDIT+M+CLPNM+VMAPSDE EL+H
Sbjct: 480 YDQVVHDVDRQRIPVRFAITSAGLVGSDGPTRCGAFDITFMSCLPNMIVMAPSDENELMH 539

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAA +DDRP CFR+PRG   G +    N G P+EIGKG++L+EG  VA+LGYG +V+
Sbjct: 540 MVATAAHVDDRPICFRYPRGATAGMSNSIWN-GIPIEIGKGKVLIEGKDVALLGYGVMVQ 598

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            C++A + L    I VTVADARFCKPLD  L+R L   H  LITVEEGS+GGF SHV+ F
Sbjct: 599 NCLKAWSLLSELGIRVTVADARFCKPLDIQLVRELCENHAFLITVEEGSVGGFGSHVAQF 658

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEAL 240
           ++L G LDG +K R + LPD YI+  SP++Q+  AGL+ +HIAATVLSLLG+ +EAL
Sbjct: 659 IALDGKLDGRIKWRPIALPDNYIEQASPEEQLAIAGLTGHHIAATVLSLLGRNREAL 715


>GSVIVT01008607001 assembled CDS
          Length = 364

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 26  GLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVHMVATAAAIDDRPSCF---RFPR 82
           G     G  H   F   Y AC P + V+ P   +E    +  AA  D  P  F       
Sbjct: 147 GAAAGVGAQHSQCFAAWYGAC-PGLKVLVPYS-SEDARGLLKAAIRDPDPVVFLENELLY 204

Query: 83  GNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVRQCVEAANKLRTRDISVTVA 142
           G     +    +    L IGK +I  EG  V I+ Y  +V   ++AA  L    IS  V 
Sbjct: 205 GQSFPVSEEALDSSFSLPIGKAKIEREGKDVTIVTYARMVDYSLQAAEILAKEGISAEVI 264

Query: 143 DARFCKPLDTDLIRRLTREHEILITVEEG 171
           + R  +PLD   I    R+   L+TVEEG
Sbjct: 265 NLRSIRPLDRSAINASVRKTSRLVTVEEG 293


>GSVIVT01000944001 assembled CDS
          Length = 429

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 26  GLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVHMVATAAAIDDRPSCF---RFPR 82
           G     G  H   +   Y +C P + V++P   +E    +  AA  D  P  F       
Sbjct: 212 GAAAGVGAQHSQCYAAWYGSC-PGLKVLSPYS-SEDARGLLKAAIRDPDPVIFLENELLY 269

Query: 83  GNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVRQCVEAANKLRTRDISVTVA 142
           G     +    +    L IGK +I  EG  V I  +  +V   ++AA+ L    IS  + 
Sbjct: 270 GESFPISAEVLDSSFCLPIGKAKIEREGRDVTITAFSKMVGFALKAADILAKDGISAEII 329

Query: 143 DARFCKPLDTDLIRRLTREHEILITVEEG 171
           + R  +PLDT  I    R+   L+TVEEG
Sbjct: 330 NLRSIRPLDTPTINASVRKTNRLVTVEEG 358