Jatropha Genome Database
- JcCA0316141.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0316141.10 + phase: 0 /pseudo/partial
(651 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01012514001 assembled CDS 120 3e-27
GSVIVT01029591001 assembled CDS 85 1e-16
GSVIVT01009261001 assembled CDS 84 3e-16
GSVIVT01021523001 assembled CDS 69 8e-12
GSVIVT01011439001 assembled CDS 58 1e-08
GSVIVT01019958001 assembled CDS 58 1e-08
GSVIVT01031037001 assembled CDS 53 5e-07
GSVIVT01030657001 assembled CDS 52 6e-07
>GSVIVT01012514001 assembled CDS
Length = 585
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 111/199 (55%), Gaps = 23/199 (11%)
Query: 285 RSIEHEIEKGHPSVLIEGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGE 344
RSIE IEKG S +G+ V+ARL+V S+ V CL G GG I S+ + SGA I+I+ +
Sbjct: 308 RSIEAGIEKGLDSGS-KGSPVSARLVVPSNQVGCLMGKGGTIISEMRKASGAGIRIIGSD 366
Query: 345 QNSDCASENDVVIEITGEYKNVQNALFLVTRKLRDTLVPSELLDEAKLR--------SPN 396
Q CASEND V++I+GE+ NVQ+ L+ +T +LRD L PS+ L+ A +R SP
Sbjct: 367 QVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGIRSSSAMNEISPY 426
Query: 397 GRVVEVASPRXXXXXXXXXXXXREASLTSAMDQLGFSNSLCNASSLRLQLTQ-------- 448
GRV + AS R +LT +MD LG S+SL + +S RL +Q
Sbjct: 427 GRVRDPASFGLHSSVGVSPSFSRHTTLTQSMDHLGLSHSLDHPTSPRLWPSQTVTGVNPR 486
Query: 449 ------KFGKGSSAAIKNN 461
+ G GS +AI N
Sbjct: 487 NIKGGIELGSGSKSAIITN 505
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 64/82 (78%)
Query: 566 LESSCSRKRSNVANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDR 625
+E K + + N+ VE+++ E++IGSV+GE+G NL RLR+ISGAKV + +P PG +DR
Sbjct: 492 IELGSGSKSAIITNTTVEIVIPENVIGSVYGENGNNLARLRKISGAKVTLHEPRPGTSDR 551
Query: 626 TVVISGTPDQTRAAQSLFQAFI 647
V+ISGTPD+T+AAQSL QAFI
Sbjct: 552 IVIISGTPDETQAAQSLLQAFI 573
>GSVIVT01029591001 assembled CDS
Length = 704
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 576 NVANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQ 635
N+ + VE+ V + ++ V+GE+ NL ++RQISGA+V + DP G ++ VV+SGTPDQ
Sbjct: 626 NITTTTVEVAVPQALLSHVYGENNSNLNQIRQISGARVVIQDPRTGSSEGVVVVSGTPDQ 685
Query: 636 TRAAQSLFQAFILAYQ 651
TRAAQSL QAFIL+ Q
Sbjct: 686 TRAAQSLVQAFILSEQ 701
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 302 GTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITG 361
G +V ARLLV S + CL G GG I S+ +GA I+I EQ C S+ND ++++ G
Sbjct: 409 GAAVVARLLVHSQQIGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCGSQNDELVQVIG 468
Query: 362 EYKNVQNALFLVTRKLRDTLVP 383
++VQ+ALF +T ++R+T+ P
Sbjct: 469 SLQSVQDALFRITSRIRETIFP 490
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
+V RLL S+ V C+ G GG+I K + SGA I++L + CAS D +I+ITG +
Sbjct: 182 AVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQITGTF 241
Query: 364 KNVQNALFLVTRKLRDT 380
V+ AL LV+ L+D
Sbjct: 242 PAVRKALLLVSSCLQDN 258
>GSVIVT01009261001 assembled CDS
Length = 672
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 59/77 (76%)
Query: 573 KRSNVANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGT 632
+++ + ++ VE++V ++ S++GEDGG L ++RQIS AK+ + +P PG ++ ++ISGT
Sbjct: 591 QQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGT 650
Query: 633 PDQTRAAQSLFQAFILA 649
P+QT AAQSL QAF+L+
Sbjct: 651 PEQTHAAQSLIQAFVLS 667
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
+V ARLLV S + CL G GG I ++ + SGA I+IL +Q CASEN+ V++I GE+
Sbjct: 390 TVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEF 449
Query: 364 KNVQNALFLVTRKLR 378
+ VQ AL +T +LR
Sbjct: 450 EAVQEALLQITTRLR 464
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 308 RLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYKNVQ 367
RLLV S V CL G GG + + + SGA I+IL ++ CAS +D +++ITGE +
Sbjct: 156 RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACK 215
Query: 368 NALFLVTRKL 377
AL ++++L
Sbjct: 216 QALQSISQQL 225
>GSVIVT01021523001 assembled CDS
Length = 435
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 580 SVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRAA 639
S ++++ + +G V G+ G N+ +R+ISGA +E+ D + DR +ISGTP+Q R A
Sbjct: 365 STFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKRTA 424
Query: 640 QSLFQAFILA 649
++L QAFI+A
Sbjct: 425 ENLIQAFIMA 434
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 301 EGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEIT 360
+ +V RLLV S ++ C+ G G I ++ + + AD++I + E+ CA ND +IE+
Sbjct: 196 DDDTVAIRLLVPSKIIGCIIGKSGSIINEIRKRTRADVRISKSERPK-CADANDELIEVV 254
Query: 361 GEYKNVQNALFLVTRKLRD 379
GE +V++AL + +LRD
Sbjct: 255 GEVGSVRDALVQIVLRLRD 273
>GSVIVT01011439001 assembled CDS
Length = 548
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 301 EGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEIT 360
E + VT RLLV SD + C+ G GG+I SGA ++IL+ + CA +D +++I+
Sbjct: 135 EASQVTVRLLVPSDQIGCVIGKGGQIIQSIRSESGAQVRILKDDHLPSCALSSDELVQIS 194
Query: 361 GEYKNVQNALFLVTRKLRD 379
GE V+ AL+ + +L D
Sbjct: 195 GEPSLVRKALYQIASRLHD 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
S T RLLV + + CL G GG I ++ + + A+I+IL E ASE+D +++I G+
Sbjct: 368 SFTTRLLVPTSRIGCLIGKGGAIITEMRKLTKANIRILSKENLPKVASEDDEMVQIAGDL 427
Query: 364 KNVQNALFLVTRKLRDTLVPSE 385
++AL VT +LR L E
Sbjct: 428 DVAKDALIQVTTRLRANLFDRE 449
>GSVIVT01019958001 assembled CDS
Length = 583
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
VT RLLV S + CL G GG I S+ + A+I+IL E ASE+D +++ITGE
Sbjct: 405 VTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKVASEDDEMVQITGELN 464
Query: 365 NVQNALFLVTRKLRDTLVPSE 385
NAL VT +L+ L E
Sbjct: 465 VASNALLQVTLRLKANLFERE 485
>GSVIVT01031037001 assembled CDS
Length = 676
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 301 EGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEIT 360
E T VTARLLV +++V CL G G++ + +GA+I++L E CA +D +++I+
Sbjct: 153 ENTVVTARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQIS 212
Query: 361 GEYKNVQNALFLVTRKL 377
G+ + AL+ V+ L
Sbjct: 213 GKPAVAKKALYEVSTLL 229
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 579 NSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRA 638
NS +E + + + SV G GGN+ + +++GA+V++ DP G ++ V I G+ + A
Sbjct: 544 NSSMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTA 603
Query: 639 AQSLFQAFILA 649
AQS+ QAF+ +
Sbjct: 604 AQSILQAFMAS 614
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
+T RLLV S V C+ G GG + ++ + ADI++ E CAS+++ +++I+G +
Sbjct: 396 MTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKEDKPKCASDDEELVQISGNFG 455
Query: 365 NVQNALFLVTRKLR 378
++AL + +LR
Sbjct: 456 VAKDALAEIASRLR 469
>GSVIVT01030657001 assembled CDS
Length = 333
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 292 EKGHPSVLIEGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCAS 351
EK H E + VT +LLV SD + C+ G GG+I SGA I IL+ + CA
Sbjct: 71 EKVHSEDFEEASQVTVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYILKNDHLLSCAL 130
Query: 352 ENDVVIEITGEYKNV------QNALFLVTRKLRDTLVP 383
D +++I+GE + + F++ + L ++VP
Sbjct: 131 SFDELVQISGERPLLGRLFIKLHLFFMIIQHLLASIVP 168