Jatropha Genome Database

JcCA0316111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316111.10 - phase: 0 /pseudo/partial
         (1028 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015096001 assembled CDS                                      1582   0.0  

>GSVIVT01015096001 assembled CDS
          Length = 1091

 Score = 1582 bits (4096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/987 (79%), Positives = 868/987 (87%), Gaps = 4/987 (0%)

Query: 1    IIQREYFKQGKLEQFRQILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKIETKQR 60
            II REYFKQGK++QFRQILEEGSS EIDEYYADVRYERIAILNALGAYYSYLGKIETKQR
Sbjct: 45   IIAREYFKQGKIDQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQR 104

Query: 61   EKEEHFIQATKHYNKASRIDMHEPSTWVGKGQLLLAKGEIEQASNAFKIVLEGDRDNVAA 120
            EKEEHFI AT++YNKASRIDMHE STWVGKGQLLLAKG++EQA  AFKIVL+GDRDNV A
Sbjct: 105  EKEEHFILATQYYNKASRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPA 164

Query: 121  LLGQACVEYNRGHYIESLARYKRALQVYPNCPGAVRLGIGHCHYKLGHFKKAWQAFERVL 180
            LLGQACVE+NRG Y +SL  YKRALQVYP+CP AVR+GIG C YKLG F+KA +AF+RVL
Sbjct: 165  LLGQACVEFNRGRYSDSLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVL 224

Query: 181  QLDPENVEALVALAILDLQTNEAAGIRRGMEKMQKAFEIYPYCAMALNYLANHFFFTGQH 240
            QLDPENVEALVAL I+DL TN+A+GIR+GMEKMQ+AFEIYPYCAMALNYLANHFFFTGQH
Sbjct: 225  QLDPENVEALVALGIMDLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284

Query: 241  FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFP 300
            FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE A  YY ASVKE NKP +FV P
Sbjct: 285  FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLP 344

Query: 301  YYGLGQVQLKLGDIKNALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAK 360
            YYGLGQVQLKLGD +++LSNFEKVLEVYP+NCE LK LGHIYVQLGQTEKAQE+LRKA K
Sbjct: 345  YYGLGQVQLKLGDFRSSLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATK 404

Query: 361  IDPRDAQAFLDLGELLISSDTGAALDAFKTARTLLTKGGQKVPIEVLNNIGVIYFEREEL 420
            IDPRDAQAFLDLGELLI+SDTGAALDAFKTAR LL KGG++VPIE+LNNIGV+YFER E 
Sbjct: 405  IDPRDAQAFLDLGELLITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEF 464

Query: 421  EPALDAFKDALGDGIWRAFLDGKAKTYKIDAAASVLQYKDMQLFHRLEEDGFDVELPWDK 480
            E A   FK+A+GDGIW +F+D KA +Y  DA  S+  +KDMQLFH+LEEDG  VELPW+K
Sbjct: 465  ELAEQTFKEAVGDGIWLSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNK 524

Query: 481  VTALFNLARLLEQMHNIETASVLYRLIVFKYPDYVDAYLRLAAIAKARNNLQLSIELVNE 540
            VT LFNLARLLEQ++N +TAS+LYRLI+FK+PDY+DAYLRLAAIAKARNN+QLSIELV +
Sbjct: 525  VTVLFNLARLLEQLNNTKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGD 584

Query: 541  ALKVNDKCPNALSMLGDLELKNDDWVKAKETLRAASEATDGKDSYATLSLGNWNYFAAIR 600
            ALKVNDK PN+L MLGDLELKNDDWVKAKET R+AS+ATDGKDSYATLSLGNWNYFAAIR
Sbjct: 585  ALKVNDKGPNSLCMLGDLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIR 644

Query: 601  NEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEA 660
            +EKR PKLEATHLEKAKELYTRVLVQH ANLYAANGAGVVLAEKGHFDVSKD+FTQVQEA
Sbjct: 645  SEKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEA 704

Query: 661  ASGNIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAE 720
            ASG++FVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQ+LLYLARTHYEAE
Sbjct: 705  ASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAE 764

Query: 721  QWQDCKKTLLRAIHLAPSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVR 780
            QWQDCKKTLLRAIHLAPSNY LRFDAGVAMQKFSASTLQKTKRT DEVRSTV EL+NAVR
Sbjct: 765  QWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVR 824

Query: 781  LFSQLSASSNLHFHGFDEKKINTHVEYCKHLLEAAKVHXXXXXXXXXXXXXXXXXXXXMA 840
            +FSQLSA+SNLHFHGFDEKKI THV YCKHLLEAAKVH                    + 
Sbjct: 825  IFSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVN 884

Query: 841  LAEDARRKAEEQRKFQLERRKQENELKRVRQQEEHFERVKEQWKSTSA-SKRRDRSEMDD 899
            LAE+ARRKAEEQRKFQLERRKQE+ELKRV QQE+HFERVKEQWKS +  SKR++RS++DD
Sbjct: 885  LAEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDD 944

Query: 900  EDGGHXXXXXXXXXXXXXXXXXXXXHYEMEEGEADIMDDHEELEDEDANVNYREQRDQMN 959
            ++GG                      Y+ EE  AD MDD +E+EDED N+N+RE  +QMN
Sbjct: 945  DEGGQ---SERRRRKGGKRRKKDKSRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMN 1001

Query: 960  DQDENAEENAHERLAAAGLEDSDAEDE 986
            +QD++ E++A + LAAAGLEDSDAED+
Sbjct: 1002 NQDDDGEDDAQDLLAAAGLEDSDAEDD 1028